View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8355_low_3 (Length: 585)
Name: NF8355_low_3
Description: NF8355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8355_low_3 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 153; Significance: 8e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 213 - 545
Target Start/End: Original strand, 34727210 - 34727542
Alignment:
| Q |
213 |
taccaggtgtgttccacggagactttgcagttgccgctccctcacattctgggatgccgacatattttccttctgtctttgcactaagagcagctagcag |
312 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||| |||||||| || ||||||||||||||||| | || |
|
|
| T |
34727210 |
taccaggtgcattccatggagactttgcagttgctgctccctcacattctgggatgccaacatcttttccttgtgcctttgcactaagagcagaaaaaag |
34727309 |
T |
|
| Q |
313 |
taaattatccttaacttcgattgccccaggtcgtagaactggggctatgcctggttgtccttcatttaaagctagagaagcatgaaaactactgcaatag |
412 |
Q |
| |
|
||| |||||||| | | || |||| ||||||||||||||||| ||||||||| | |||||||| |||||||||| |||||||| ||||| |||||| |
|
|
| T |
34727310 |
taagttatcctttaaaccaatgcccccgggtcgtagaactggggccatgcctggtggcccttcattcaaagctagagcggcatgaaagctactacaatag |
34727409 |
T |
|
| Q |
413 |
tcttgacacaagtccaatccttgcgcgggccatgaacagtcccaaagtgcacattttgagcctaggaaagcagaaggaggaggacatacgcttggtagat |
512 |
Q |
| |
|
||||||||| ||||||| ||||| ||||| | || ||||||||||||||||||||||| ||| | |||||||||||||||||| ||||| |||||||||| |
|
|
| T |
34727410 |
tcttgacaccagtccaacccttgtgcgggtcttggacagtcccaaagtgcacattttgggcccaagaaagcagaaggaggagggcatacacttggtagat |
34727509 |
T |
|
| Q |
513 |
agctaggtatataaggaacaatatcctcctcac |
545 |
Q |
| |
|
|||||| |||| ||||||| ||||||||||| |
|
|
| T |
34727510 |
agctagatataagaggaacagcatcctcctcac |
34727542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 34727001 - 34727107
Alignment:
| Q |
18 |
acctttgctttctgtttccactctcaaatgctcttcgagacttatcaatgaaaagccactccctaatagtctccccctcaagaacaaaaagatcaaagag |
117 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||| |||||||| ||| ||||| |||||||||||||| |||||||||||| |||| |||||||| |
|
|
| T |
34727001 |
acctctgctttctgtttccactttcaaatgctcttcgaggcttatcaaagaagagccattccctaatagtctcgccctcaagaacagaaaggtcaaagag |
34727100 |
T |
|
| Q |
118 |
ctgtgca |
124 |
Q |
| |
|
|| |||| |
|
|
| T |
34727101 |
ctctgca |
34727107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 495
Target Start/End: Complemental strand, 30591884 - 30591836
Alignment:
| Q |
447 |
aacagtcccaaagtgcacattttgagcctaggaaagcagaaggaggagg |
495 |
Q |
| |
|
|||||||||| ||||||||||||| | |||||||||||||||| ||||| |
|
|
| T |
30591884 |
aacagtcccacagtgcacattttggggctaggaaagcagaaggtggagg |
30591836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 503 - 585
Target Start/End: Complemental strand, 4327690 - 4327608
Alignment:
| Q |
503 |
cttggtagatagctaggtatataaggaacaatatcctcctcactaaagcctgtgcctctaaaagcagtataacagttgtgatt |
585 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4327690 |
cttggtagatagctaggtatataaggaacaacatcctcctcactaaagcctgtgcctctaaaagcagtataacagttgtgatt |
4327608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 357 - 435
Target Start/End: Complemental strand, 4327765 - 4327687
Alignment:
| Q |
357 |
ctatgcctggttgtccttcatttaaagctagagaagcatgaaaactactgcaatagtcttgacacaagtccaatccttg |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4327765 |
ctatgcctggttgtccttcatttaaagctagagaagcatgaaaactactgcaatagtcttgacacaagtccaatccttg |
4327687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University