View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8355_low_4 (Length: 500)
Name: NF8355_low_4
Description: NF8355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8355_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Original strand, 46353544 - 46354012
Alignment:
| Q |
18 |
aggaagggtataattgacatctatttattcagtttaattgatgaaaatgctaaaagtattgctcctggcaactttgagagacattggggaattttcgagt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46353544 |
aggaagggtataattgacatctatttattcagtttaattgatgaaaatgctaaaagtattgctcctggcaactttgagagacattggggaatttttgagt |
46353643 |
T |
|
| Q |
118 |
ttgatggaaaaccaaaatatgaattggatttaaaaggatttcaaggtgatgaaggtcttgtagctgttgaaggtgttaagtatatggaaaaacagtggtg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46353644 |
ttgatggaaaaccaaaatatgaattggatttaaaaggatttcaaggtgatgaaggtcttgtagctgttgaaggtgttaagtatatggaaaaacagtggtg |
46353743 |
T |
|
| Q |
218 |
tattttggatcctgatattagtgatttgcattatttggttggtagtattgattatgcatgtagcttatcagattgtactgcattaggatatggatcttct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46353744 |
tattttggatcctgatattagtgatttgcattatttggctggtagtattgattatgcatgtagcttatcagattgtactgcattaggatatggatcttct |
46353843 |
T |
|
| Q |
318 |
tgtaatggtttgagtcttgaagggaatgcttcttatgcatttaatatgtattatcaagtgcataatcagaaggattgggattgtgatttttcaggtttgg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46353844 |
tgtaatggtttgagtcttgaagggaatgcttcttatgcatttaatatgtattatcaagtgcataatcagaaggattgggattgtgatttttcaggtttgg |
46353943 |
T |
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| Q |
418 |
ctatcttatcagatcaggatccatcagaaaaggggtgtcagtttcctgtcatgatctctcatgcttcat |
486 |
Q |
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| T |
46353944 |
ctatcttatcagatcaggatccatcagaaaaggggtgtcagtttcctgtcatgatctctcatgcttcat |
46354012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 51490082 - 51490138
Alignment:
| Q |
69 |
aaaagtattgctcctggcaactttgagagacattggggaattttcgagtttgatgga |
125 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||| | ||||||||| |
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| T |
51490082 |
aaaagtattgatcctggcccatttgagagacattggggaattttcaattttgatgga |
51490138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 374
Target Start/End: Original strand, 51490349 - 51490381
Alignment:
| Q |
342 |
aatgcttcttatgcatttaatatgtattatcaa |
374 |
Q |
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| T |
51490349 |
aatgcttcatatgcatttaatatgtattatcaa |
51490381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 43 - 421
Target Start/End: Original strand, 22384893 - 22385271
Alignment:
| Q |
43 |
tattcagtttaattgatgaaaatgctaaaagtattgctcctggcaactttgagagacattggggaattttcgagtttgatggaaaaccaaaatatgaatt |
142 |
Q |
| |
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|||||||| | |||||||| |||| ||||||| ||||||| |||||||||||||| |||||||| |||| |||||||||||||||||||| |||||||| |
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| T |
22384893 |
tattcagtctcattgatgagaatgataaaagtgttgctccaggcaactttgagaggcattgggggatttatgagtttgatggaaaaccaaagtatgaatt |
22384992 |
T |
|
| Q |
143 |
ggatttaaaaggatttcaaggtgatgaaggtcttgtagctgttgaaggtgttaagtatatggaaaaacagtggtgtattttggatcctgatattagtgat |
242 |
Q |
| |
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|| ||| |||| ||| || | |||||||| |||||||||| | ||||| | |||||| | |||||| |||||||||| || || |||| |
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| T |
22384993 |
agacataagaggaaatcataaggaaaagggtcttgtttctgttgaagggataaagtacctagaaaaaaaatggtgtgttttggatccagaagctactgat |
22385092 |
T |
|
| Q |
243 |
ttgcattatttggttggtagtattgattatgcatgtagcttatcagattgtactgcattaggatatggatcttcttgtaatggtttgagtcttgaaggga |
342 |
Q |
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||| || |||||| | | | |||| ||||| |||||| || |||||||| ||| | |||||||| | | ||||| | | | | | || |||||| |
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| T |
22385093 |
ttggatgatttgggtaaaaatgttgactatgcttgtagccattctgattgtacagcacttggatatggctgtagttgtagtaatctaaatgttcaaggga |
22385192 |
T |
|
| Q |
343 |
atgcttcttatgcatttaatatgtattatcaagtgcataatcagaaggattgggattgtgatttttcaggtttggctat |
421 |
Q |
| |
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||||||| ||||| || ||||||||||||||||| || | |||| ||||||||| |||||||| || ||||||||||| |
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| T |
22385193 |
atgcttcatatgctttcaatatgtattatcaagttaatgaccagatggattgggactgtgatttctctggtttggctat |
22385271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 342 - 388
Target Start/End: Complemental strand, 10251067 - 10251021
Alignment:
| Q |
342 |
aatgcttcttatgcatttaatatgtattatcaagtgcataatcagaa |
388 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
10251067 |
aatgcttcatatgcatttaatatgtattatcaagtgcaaaatcagaa |
10251021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 421
Target Start/End: Original strand, 2272380 - 2272456
Alignment:
| Q |
346 |
cttcttatgcatttaatatgtattatcaagtgcataatcag-aaggattgggattgtgatttttcaggtttggctat |
421 |
Q |
| |
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|||||| ||||||||||||||||| ||||||| |||||||| ||||||||| |||| || || || ||||||||||| |
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| T |
2272380 |
cttcttgtgcatttaatatgtattgtcaagtgaataatcagaaaggattggaattgagacttctctggtttggctat |
2272456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 335
Target Start/End: Original strand, 2272315 - 2272382
Alignment:
| Q |
265 |
ttgattatgcatgtagcttatcagattgtactgcattaggatatggatcttcttgtaatggtttgagtctt |
335 |
Q |
| |
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|||| ||||| ||||| |||||| |||||||| |||| |||||||| |||||||||||||||||||||| |
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| T |
2272315 |
ttgactatgcttgtagtttatcaaattgtactacattgggatatgg---ttcttgtaatggtttgagtctt |
2272382 |
T |
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