View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8356_low_1 (Length: 425)
Name: NF8356_low_1
Description: NF8356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8356_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 184 - 407
Target Start/End: Complemental strand, 6224437 - 6224214
Alignment:
| Q |
184 |
tataaattgtgcattaaaatgcagaagcataagagaaagtgcacgaaagacacttttaacaaacattcaatataacaaatctacacgaatttgacacata |
283 |
Q |
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| T |
6224437 |
tataaattgtgcattaacatgcagaagcataagagaaagtgcacgacagacacttttaacaaacattcaatataacaaatctacacgaatttgacacata |
6224338 |
T |
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| Q |
284 |
agtttccaaagatgaattcaaagttttcataagtagcatggattttacaaaatttgttcaaataaaatcatatgagaaggtaatttttatcaaaccttga |
383 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6224337 |
agtttccaaagatgaattcaaagatttcataagtagcacggattttacaaaatttgttcaaataaaatgatatgagaaggtaatttttatcaaaccttga |
6224238 |
T |
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| Q |
384 |
acaaacattgtcaaataatcactt |
407 |
Q |
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|||||||||||||||||||||||| |
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| T |
6224237 |
acaaacattgtcaaataatcactt |
6224214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 6224607 - 6224496
Alignment:
| Q |
14 |
agatgtgcaaatacaacaaacatgtgtgtatgcaacagattaatgattgatttagtctttcccctggttctcataggatatctcgtgacctctgcaaacc |
113 |
Q |
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| T |
6224607 |
agatgtgcaaaaacaacaaacatgtgtgtatgcaacagattaatgattgatgtagtctttcccctggctctcataggatatctcgtgacctctgcaaacc |
6224508 |
T |
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| Q |
114 |
agactcacgtgc |
125 |
Q |
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|||||||||||| |
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| T |
6224507 |
agactcacgtgc |
6224496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 334 - 407
Target Start/End: Complemental strand, 1693296 - 1693223
Alignment:
| Q |
334 |
aatttgttcaaataaaatcatatgagaaggtaatttttatcaaaccttgaacaaacattgtcaaataatcactt |
407 |
Q |
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| T |
1693296 |
aatttggtcaaataaaatgatatgagaagataatttttatcaaaccttgaacaaacattgtcaaataatcactt |
1693223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 407
Target Start/End: Original strand, 34620833 - 34620883
Alignment:
| Q |
357 |
gagaaggtaatttttatcaaaccttgaacaaacattgtcaaataatcactt |
407 |
Q |
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|||| ||||| ||||||||||||||||||||||||||| | |||| ||||| |
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| T |
34620833 |
gagagggtaacttttatcaaaccttgaacaaacattgttatataaccactt |
34620883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 40909852 - 40909741
Alignment:
| Q |
14 |
agatgtgcaaatacaacaaacatgtgtgtatgcaacagattaatgattgatttagtctttcccctggttctcataggatatctcgtgacctctgcaaacc |
113 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| ||| |
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| T |
40909852 |
agatgtgcaaaaacaacaaacatgtgtgtatgcaacagattaatgattgattcagtctttcccctggctctcataggatttctcgtgacctctgcagacc |
40909753 |
T |
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| Q |
114 |
agactcacgtgc |
125 |
Q |
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|||||||||||| |
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| T |
40909752 |
agactcacgtgc |
40909741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 184 - 290
Target Start/End: Complemental strand, 40909682 - 40909576
Alignment:
| Q |
184 |
tataaattgtgcattaaaatgcagaagcataagagaaagtgcacgaaagacacttttaacaaacattcaatataacaaatctacacgaatttgacacata |
283 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40909682 |
tataaattgtgcattaaaatgcagaagcataagaggaagtgcacgactgacacttttaacaaacattcaatataacaaatctacacgaatttaacacata |
40909583 |
T |
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| Q |
284 |
agtttcc |
290 |
Q |
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||||||| |
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| T |
40909582 |
agtttcc |
40909576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 334 - 407
Target Start/End: Original strand, 8774076 - 8774149
Alignment:
| Q |
334 |
aatttgttcaaataaaatcatatgagaaggtaatttttatcaaaccttgaacaaacattgtcaaataatcactt |
407 |
Q |
| |
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|||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8774076 |
aatttggtcaaataaaatgatatgagaagataatttttatcaaaccttgaacaaacattgtcaaataatcactt |
8774149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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