View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8356_low_2 (Length: 253)

Name: NF8356_low_2
Description: NF8356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8356_low_2
NF8356_low_2
[»] chr6 (1 HSPs)
chr6 (1-236)||(1487074-1487308)
[»] chr8 (3 HSPs)
chr8 (18-202)||(24248059-24248241)
chr8 (54-114)||(40930170-40930230)
chr8 (54-114)||(40930250-40930310)
[»] chr7 (1 HSPs)
chr7 (8-105)||(35726459-35726556)
[»] chr3 (2 HSPs)
chr3 (39-114)||(8252421-8252496)
chr3 (38-122)||(32152880-32152964)
[»] chr2 (1 HSPs)
chr2 (8-109)||(11267773-11267872)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 1487074 - 1487308
Alignment:
Q  1 cttacctaagtaacaatcaaaacaaaatcaacaagcataaattaacctatgcccacacaaacaaaagggctacgacaccaactatgatagtcaaaagcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1487074 cttacctaagtaacaatcaaaacaaaatcaacaagcataaattaacctatgcccacacaaacaaaagggctacgacaccaactatgatagtcaaaagcaa 1487173  T
Q  101 tatgagcaacttttttcttcagtcactagtatnnnnnnncagcttaattttgtccaagaaacgataattagagcttcctttactattaaaaattatgttg 200  Q
    |||||||||||||||||||| || ||| |||        |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  1487174 tatgagcaacttttttcttcggttactggta-aaaaaaacagcttaattttgtccaagaaatgataattagagcttcctttactattaaaaatcatgttg 1487272  T
Q  201 tttcaatttccaagagaaccaaactaaatgcattat 236  Q
    ||||||| ||||||||||||||||||||||||||||    
T  1487273 tttcaatctccaagagaaccaaactaaatgcattat 1487308  T

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Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 24248059 - 24248241
Alignment:
Q  18 caaaacaaaatcaacaagcataaattaacctatgcccacacaaacaaaagggctacgacaccaactatgatagtcaaaagcaatatgagcaacttttttc 117  Q
    |||||||||| ||| ||||| || |||| ||||||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||| ||| ||||  |    
T  24248059 caaaacaaaaccaaaaagcagaatttaatctatgcccacacaaacaaaagggctacgacatcaagtatggtagtcaaaagcattatgaacaaattttgcc 24248158  T
Q  118 ttcagtcactagtatnnnnnnncagcttaattttgtccaagaaacgataattagagcttcctttactattaaaaattatgttgtt 202  Q
    ||||||||||||||        || | ||| ||||| |||||   |||||||||||||||||||| |||||||||| ||| ||||    
T  24248159 ttcagtcactagta--agaaaacaacataaatttgttcaagaggtgataattagagcttcctttattattaaaaatcatgctgtt 24248241  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 40930230 - 40930170
Alignment:
Q  54 cacacaaacaaaagggctacgacaccaactatgatagtcaaaagcaatatgagcaactttt 114  Q
    ||||||||||||| ||||| |||||| ||||||||| |||||| |||||||||||| ||||    
T  40930230 cacacaaacaaaaaggctaagacaccgactatgatattcaaaatcaatatgagcaaatttt 40930170  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 40930310 - 40930250
Alignment:
Q  54 cacacaaacaaaagggctacgacaccaactatgatagtcaaaagcaatatgagcaactttt 114  Q
    |||||||||||||  |||| |  ||||||||||||||||||||||||||||| ||| ||||    
T  40930310 cacacaaacaaaaatgctaaggtaccaactatgatagtcaaaagcaatatgaccaaatttt 40930250  T

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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 35726556 - 35726459
Alignment:
Q  8 aagtaacaatcaaaacaaaatcaacaagcataaattaacctatgcccacacaaacaaaagggctacgacaccaactatgatagtcaaaagcaatatga 105  Q
    ||||||||||| |||||||| ||| ||||| |||||||  |||| ||||||||  ||||||||||| ||||||||||||||||||||||| |||||||    
T  35726556 aagtaacaatcgaaacaaaaccaaaaagcagaaattaatttatgtccacacaattaaaagggctacaacaccaactatgatagtcaaaagtaatatga 35726459  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 8252496 - 8252421
Alignment:
Q  39 aaattaacctatgcccacacaaacaaaagggctacgacaccaactatgatagtcaaaagcaatatgagcaactttt 114  Q
    |||||||  ||||||||||||||||| |||| | ||||||||||||||||||| ||||||||||||||||| ||||    
T  8252496 aaattaatgtatgcccacacaaacaatagggttgcgacaccaactatgatagttaaaagcaatatgagcaaatttt 8252421  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 32152880 - 32152964
Alignment:
Q  38 taaattaacctatgcccacacaaacaaaagggctacgacaccaactatgatagtcaaaagcaatatgagcaacttttttcttcag 122  Q
    |||||||||| ||| ||| |||||||||||| | | | ||||||||| |||| ||||||||||||| ||||  |||| |||||||    
T  32152880 taaattaacccatggccaaacaaacaaaaggacaaagccaccaactacgataatcaaaagcaatattagcatattttgtcttcag 32152964  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 11267872 - 11267773
Alignment:
Q  8 aagtaacaatcaaaacaaaatcaacaagcataaattaacctatgcccacacaaacaaaagggctacgacaccaactatgatagtcaaaagcaatatgagc 107  Q
    ||||||||| | ||||||||  || | ||| |||||||||||||| || ||||| |||  ||||||||||| |||||| ||||||||| |||||||||||    
T  11267872 aagtaacaaccgaaacaaaactaaaaggcagaaattaacctatgcacatacaaaaaaa--ggctacgacactaactataatagtcaaaggcaatatgagc 11267775  T

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