View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8356_low_3 (Length: 232)

Name: NF8356_low_3
Description: NF8356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8356_low_3
NF8356_low_3
[»] chr8 (14 HSPs)
chr8 (18-232)||(8194451-8194665)
chr8 (32-124)||(8195128-8195220)
chr8 (18-96)||(18471177-18471256)
chr8 (18-86)||(8472763-8472832)
chr8 (43-94)||(32690186-32690237)
chr8 (18-68)||(8471986-8472036)
chr8 (29-123)||(33493777-33493868)
chr8 (18-94)||(541605-541682)
chr8 (18-97)||(32051604-32051684)
chr8 (32-92)||(43942009-43942069)
chr8 (18-96)||(7066121-7066200)
chr8 (175-231)||(6575199-6575255)
chr8 (156-232)||(21501159-21501235)
chr8 (18-68)||(32593609-32593659)
[»] chr1 (9 HSPs)
chr1 (32-232)||(27821757-27821957)
chr1 (18-121)||(1908284-1908388)
chr1 (18-124)||(45395889-45395998)
chr1 (18-124)||(14613977-14614084)
chr1 (18-100)||(25104718-25104801)
chr1 (18-96)||(37827935-37828014)
chr1 (18-96)||(32754916-32754995)
chr1 (32-86)||(24182548-24182602)
chr1 (174-232)||(41491066-41491124)
[»] chr5 (7 HSPs)
chr5 (133-228)||(22162886-22162981)
chr5 (18-137)||(4445561-4445681)
chr5 (18-124)||(4446476-4446584)
chr5 (43-94)||(22160285-22160336)
chr5 (43-94)||(22164736-22164787)
chr5 (47-94)||(39387622-39387669)
chr5 (25-65)||(27828359-27828399)
[»] chr2 (14 HSPs)
chr2 (18-124)||(17670224-17670330)
chr2 (18-84)||(17625837-17625903)
chr2 (18-122)||(24201326-24201431)
chr2 (18-124)||(23221053-23221157)
chr2 (43-94)||(816889-816940)
chr2 (18-94)||(37469247-37469324)
chr2 (43-92)||(818900-818949)
chr2 (18-86)||(2007088-2007155)
chr2 (18-92)||(14931879-14931954)
chr2 (194-232)||(17724569-17724607)
chr2 (18-68)||(33896770-33896820)
chr2 (28-92)||(11493880-11493946)
chr2 (28-92)||(3304647-3304711)
chr2 (25-89)||(35942057-35942120)
[»] chr7 (11 HSPs)
chr7 (18-124)||(23839386-23839493)
chr7 (18-124)||(1011501-1011608)
chr7 (18-124)||(1012363-1012470)
chr7 (19-94)||(22797609-22797685)
chr7 (18-91)||(7932376-7932450)
chr7 (174-232)||(24234807-24234865)
chr7 (20-92)||(39894887-39894962)
chr7 (43-94)||(38609408-38609460)
chr7 (18-88)||(322031-322102)
chr7 (18-68)||(28369368-28369418)
chr7 (18-68)||(29907266-29907316)
[»] chr4 (14 HSPs)
chr4 (18-124)||(39437267-39437374)
chr4 (21-124)||(32476571-32476674)
chr4 (18-124)||(49529579-49529684)
chr4 (18-121)||(50848100-50848204)
chr4 (18-92)||(44897902-44897977)
chr4 (18-96)||(47442023-47442102)
chr4 (19-103)||(37078356-37078441)
chr4 (21-94)||(41224026-41224099)
chr4 (175-232)||(20704819-20704876)
chr4 (18-92)||(37079084-37079159)
chr4 (18-89)||(6848624-6848696)
chr4 (197-232)||(13039187-13039222)
chr4 (157-220)||(14796667-14796730)
chr4 (18-93)||(22384067-22384143)
[»] chr6 (4 HSPs)
chr6 (18-96)||(15869354-15869433)
chr6 (43-94)||(20591902-20591953)
chr6 (32-92)||(20595522-20595580)
chr6 (157-228)||(12895542-12895613)
[»] scaffold0175 (1 HSPs)
scaffold0175 (175-231)||(32072-32128)
[»] chr3 (4 HSPs)
chr3 (18-96)||(20269863-20269942)
chr3 (27-94)||(48596778-48596845)
chr3 (174-232)||(55253809-55253867)
chr3 (18-67)||(28767459-28767508)
[»] scaffold0005 (1 HSPs)
scaffold0005 (157-220)||(43001-43064)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 8194451 - 8194665
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaatagtgtgatctcattatagacacacagagagtttacacagacttcacat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8194451 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaatagtgtgatctcattatagacacacagagagtttacacagacttcacat 8194550  T
Q  118 attttacttggtatcagagcaaaacgttttaaatattgagaaaacttctgaacgacttttcatcaaaaatacccaagtacatctagaaaagtcatcaata 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8194551 attttacttggtatcagagcaaaacgttttaaatattgagaaaacttctgaacgacttttcatcaaaaatacccaagtacatctagaaaagtcatcaata 8194650  T
Q  218 aaagtaacaaaatat 232  Q
    |||||||||||||||    
T  8194651 aaagtaacaaaatat 8194665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 8195128 - 8195220
Alignment:
Q  32 attcaatgcacttattgtaacaccattataaatacaatagtgtgatctcattatagacacacagagagtttacacagacttcacatattttac 124  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8195128 attccatgtacttattgtaacaccattataaatacaatagtgtgatctcattataggcacacagagagtttacacagacttcacatattttac 8195220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 18471256 - 18471177
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacaga 96  Q
    |||||| ||||||||||||||||| |||| |||| ||||||||||||||||   ||||||||||||||||||||||||||    
T  18471256 cttactcattaagcattcaatgcatttatcgtaaaaccattataaatacaaggtgtgtgatctcattatagacacacaga 18471177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 8472763 - 8472832
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattata 86  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||   ||||||||||||||||    
T  8472763 cttactaattaagcattcaatgcacctattgtaaaaccattataaatacaaggtgtgtgatctcattata 8472832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 32690186 - 32690237
Alignment:
Q  43 ttattgtaacaccattataaatacaatagtgtgatctcattatagacacaca 94  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  32690186 ttattgtaacaccattataaatacaagggtgtgatctcattatagacacaca 32690237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 8471986 - 8472036
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaa 68  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  8471986 cttactaattaagcattcaatgcacttattctaaaaccattataaatacaa 8472036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 33493868 - 33493777
Alignment:
Q  29 agcattcaatgcacttattgtaacaccattataaatacaata-gtgtgatctcattatagacacacagagagtttacacagacttcacatatttta 123  Q
    ||||||||||| | ||||||||| | |||||||||||||| | |||||||||||||||||||||    |||||||||||| |||| ||||||||||    
T  33493868 agcattcaatgtatttattgtaaaatcattataaatacaagatgtgtgatctcattatagacac----agagtttacacatacttaacatatttta 33493777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 541682 - 541605
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacaca 94  Q
    ||||||||||||||||| |||||| ||||||||| || |||||||||| || | ||||||||||||||| ||||||||    
T  541682 cttactaattaagcattgaatgcatttattgtaaaacaattataaatagaagttgtgtgatctcattattgacacaca 541605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 32051684 - 32051604
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacagag 97  Q
    |||||||||||||| ||||||| | ||||||||| ||||||||||||||||   || |||| |||||||||||||||||||    
T  32051684 cttactaattaagcgttcaatgtatttattgtaaaaccattataaatacaaggtgtatgatatcattatagacacacagag 32051604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 43942069 - 43942009
Alignment:
Q  32 attcaatgcacttattgtaacaccattataaatacaatagtgtgatctcattatagacaca 92  Q
    |||||||| | |||||||||||| | |||||||||||| ||||||||||||||||||||||    
T  43942069 attcaatgtatttattgtaacactagtataaatacaattgtgtgatctcattatagacaca 43942009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 7066200 - 7066121
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacaga 96  Q
    ||||||||| ||| |||||||||||| ||||||| | |||||||| |||||   ||||||||||||||||||||||||||    
T  7066200 cttactaatgaagtattcaatgcactaattgtaaaatcattataattacaaggtgtgtgatctcattatagacacacaga 7066121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 6575199 - 6575255
Alignment:
Q  175 tttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaacaaaata 231  Q
    |||||| |||||||||||||||||||| || || |||||||||||||||||| ||||    
T  6575199 tttcattaaaaatacccaagtacatcttgagaaatcatcaataaaagtaacataata 6575255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 21501235 - 21501159
Alignment:
Q  156 agaaaacttctgaacgacttttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaacaaaatat 232  Q
    ||||||||||| ||| | ||||||| | ||||| || ||| ||||  ||||||||||||||||||||||||||||||    
T  21501235 agaaaacttcttaacaatttttcattacaaatatcctagttcatccggaaaagtcatcaataaaagtaacaaaatat 21501159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 32593609 - 32593659
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaa 68  Q
    |||||||||||||||||||||| | ||||| ||| ||||||||||||||||    
T  32593609 cttactaattaagcattcaatgtatttattataaaaccattataaatacaa 32593659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 32 - 232
Target Start/End: Original strand, 27821757 - 27821957
Alignment:
Q  32 attcaatgcacttattgtaacaccattataaatacaatagtgtgatctcattatagacacacagagagtttacacagacttcacatattttacttggtat 131  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||||| || ||||||||||  ||||||    
T  27821757 attcaatgtatttattgtaacaccattataaatacaatagtgtgatctcattatagacacacaaata-ttcacacagaatttacatattttatatggtat 27821855  T
Q  132 cagagcaaaacgttttaaatattgagaaaacttctgaacgacttttcatcaaaa-atacccaagtacatctagaaaagtcatcaataaaagtaacaaaat 230  Q
    |||||||||| |||||||| ||||||||||||||||||||| ||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  27821856 cagagcaaaaagttttaaacattgagaaaacttctgaacgatttttcattaaaatatactcaagtacatctagaaaagtcatcaataaaagtaacaaaat 27821955  T
Q  231 at 232  Q
    ||    
T  27821956 at 27821957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 1908284 - 1908388
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaata-gtgtgatctcattatagacacacagagagtttacacagacttcaca 116  Q
    |||||||| ||||||||||||| | |||||||||  |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  1908284 cttactaaataagcattcaatgtatttattgtaaagccattataaatacaagctgtgtgatctcattatagacacacagagagtttacacagacttcaca 1908383  T
Q  117 tattt 121  Q
    |||||    
T  1908384 tattt 1908388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 45395889 - 45395998
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaata-gtgtgatctcattatagacacacagagagttt--acacagacttca 114  Q
    |||||||| ||||||||||||| | |||||||||  |||||||||||||||   ||||||||||||||||||||||||||||||||  ||||||||||||    
T  45395889 cttactaaataagcattcaatgtatttattgtaaagccattataaatacaagctgtgtgatctcattatagacacacagagagtttacacacagacttca 45395988  T
Q  115 catattttac 124  Q
    ||||||||||    
T  45395989 catattttac 45395998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 14613977 - 14614084
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaata-gtgtgatctcattatagacacacagagagtttacacagacttcaca 116  Q
    |||||||| |||| ||| | || | |||||||||  |||||||||||||||   |||||||||||||||||||||||| |||||||||||| ||||||||    
T  14613977 cttactaaataagtatttagtgtatttattgtaaagccattataaatacaagctgtgtgatctcattatagacacacatagagtttacacatacttcaca 14614076  T
Q  117 tattttac 124  Q
    ||||||||    
T  14614077 tattttac 14614084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 25104801 - 25104718
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacagagagt 100  Q
    |||||||| ||||||||||||| | |||||||||  |||||||||||||||   |||||||||||||||||||||||| |||||    
T  25104801 cttactaaataagcattcaatgtatttattgtaaagccattataaatacaagctgtgtgatctcattatagacacacacagagt 25104718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 37827935 - 37828014
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacaga 96  Q
    |||||| |||||||||| |||||  ||||||||| ||||||||||||||||   ||||||||||||||||||||||||||    
T  37827935 cttacttattaagcattgaatgcttttattgtaaaaccattataaatacaaggtgtgtgatctcattatagacacacaga 37828014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 32754995 - 32754916
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacaga 96  Q
    |||||||| ||||||||||||  | ||||||||| ||||||||||||||||   |||||||||||||||||||| |||||    
T  32754995 cttactaaataagcattcaatttatttattgtaaaaccattataaatacaaggtgtgtgatctcattatagacagacaga 32754916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 24182602 - 24182548
Alignment:
Q  32 attcaatgcacttattgtaacaccattataaatacaatagtgtgatctcattata 86  Q
    |||||||| | ||||| || ||||||||||||||||||||||| |||||||||||    
T  24182602 attcaatgtatttattataccaccattataaatacaatagtgtcatctcattata 24182548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 41491066 - 41491124
Alignment:
Q  174 ttttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaacaaaatat 232  Q
    ||||||| ||||||| ||| || || | ||||||||||||||||||||| |||||||||    
T  41491066 ttttcattaaaaataaccatgtgcaacgagaaaagtcatcaataaaagtgacaaaatat 41491124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 22162886 - 22162981
Alignment:
Q  133 agagcaaaacgttttaaatattgagaaaacttctgaacgacttttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaacaaa 228  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22162886 agagcaaaaagttttaaatattgagaaaacttctgaacgacttttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaacaaa 22162981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 4445561 - 4445681
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaata-gtgtgatctcattatagacacacagagagtttacacagacttcaca 116  Q
    |||||||| |||||||| |||| | |||||||||  |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  4445561 cttactaaataagcatttaatgtatttattgtaaagccattataaatacaagctgtgtgatctcattatagacacacagagagtttacacagacttcaca 4445660  T
Q  117 tattttacttggtatcagagc 137  Q
    |||||||| ||||||||||||    
T  4445661 tattttacatggtatcagagc 4445681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 4446476 - 4446584
Alignment:
Q  18 cttactaattaagc-attcaatgcacttattgtaacaccattataaatacaata-gtgtgatctcattatagacacacagagagtttacacagacttcac 115  Q
    |||||||| ||||| |||||||| | |||||||||  |||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||| ||    
T  4446476 cttactaaataagccattcaatgtatttattgtaaagccattataaatagaagctgtgtgatctcattatagacacacagagagtttacacagacttaac 4446575  T
Q  116 atattttac 124  Q
    |||||||||    
T  4446576 atattttac 4446584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 22160336 - 22160285
Alignment:
Q  43 ttattgtaacaccattataaatacaatagtgtgatctcattatagacacaca 94  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  22160336 ttattgtaacactagtataaatacaatagtgtgatctcattatagacacaca 22160285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 22164787 - 22164736
Alignment:
Q  43 ttattgtaacaccattataaatacaatagtgtgatctcattatagacacaca 94  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  22164787 ttattgtaacactagtataaatacaatagtgtgatctcattatagacacaca 22164736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 39387622 - 39387669
Alignment:
Q  47 tgtaacaccattataaatacaatagtgtgatctcattatagacacaca 94  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||    
T  39387622 tgtaacactagtataaatacaatagtgtgatctcattatagacacaca 39387669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 27828399 - 27828359
Alignment:
Q  25 attaagcattcaatgcacttattgtaacaccattataaata 65  Q
    ||||||||||||||||| ||||||||| |||||||||||||    
T  27828399 attaagcattcaatgcatttattgtaaaaccattataaata 27828359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 17670224 - 17670330
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaatagtgtgatctcattatagacacacagagagtttacacagacttcacat 117  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| || ||||    
T  17670224 cttactaattaagcattcaatgcacttattgtaaaaccattataaatacaatagcgtgatctcattatagacacacagagagtttactcagattttacat 17670323  T
Q  118 attttac 124  Q
    |||||||    
T  17670324 attttac 17670330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 17625837 - 17625903
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaatagtgtgatctcatta 84  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17625837 cttactaattaagcattcaatgcacttattgtaaaaccattataaatacaatagtgtgatctcatta 17625903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 24201326 - 24201431
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaata-gtgtgatctcattatagacacacagagagtttacacagacttcaca 116  Q
    |||||||| ||||||||||||| | |||||||||  |||||||||||||||   ||||||||||||||| || |||||||||||||||||||||||||||    
T  24201326 cttactaaataagcattcaatgtatttattgtaaagccattataaatacaagctgtgtgatctcattattgatacacagagagtttacacagacttcaca 24201425  T
Q  117 tatttt 122  Q
    ||||||    
T  24201426 tatttt 24201431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 23221053 - 23221157
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacagagagtttacacagacttcaca 116  Q
    ||||||||||||||||||||||||||||  | || ||||||||||||||||   |||||||||||||||||||||||  | ||||||||||||||| |||    
T  23221053 cttactaattaagcattcaatgcacttacgggaaaaccattataaatacaaggtgtgtgatctcattatagacacac--acagtttacacagactt-aca 23221149  T
Q  117 tattttac 124  Q
    ||||||||    
T  23221150 tattttac 23221157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 816940 - 816889
Alignment:
Q  43 ttattgtaacaccattataaatacaatagtgtgatctcattatagacacaca 94  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  816940 ttattgtaacactagtataaatacaatagtgtgatctcattatagacacaca 816889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 37469324 - 37469247
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaatag--tgtgatctcattatagacacaca 94  Q
    |||| ||||||||||||||||| | ||||||||| |||||||||||||||| ||  |||||||||||||||||| ||||    
T  37469324 cttattaattaagcattcaatgtatttattgtaaaaccattataaatacaa-agtctgtgatctcattatagacccaca 37469247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 818949 - 818900
Alignment:
Q  43 ttattgtaacaccattataaatacaatagtgtgatctcattatagacaca 92  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||    
T  818949 ttattgtaacactggtataaatacaatagtgtgatctcattatagacaca 818900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 2007155 - 2007088
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaatagtgtgatctcattata 86  Q
    |||||||||||||||||| ||| | ||||||||| ||||||||||||||||  |||||||| |||||||    
T  2007155 cttactaattaagcattcgatgtatttattgtaaaaccattataaatacaa-ggtgtgatcccattata 2007088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 14931954 - 14931879
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaata-gtgtgatctcattatagacaca 92  Q
    |||||| ||||| ||| ||||||| ||||||||| ||||||| || ||||| | ||||||||||||||||||||||    
T  14931954 cttactcattaaacatgcaatgcatttattgtaaaaccattaaaagtacaacatgtgtgatctcattatagacaca 14931879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 17724607 - 17724569
Alignment:
Q  194 gtacatctagaaaagtcatcaataaaagtaacaaaatat 232  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  17724607 gtacatctagaaaactcatcaataaaagtaacaaaatat 17724569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 33896820 - 33896770
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaa 68  Q
    |||||||||||||||||||||| | ||||||| | ||||||||||||||||    
T  33896820 cttactaattaagcattcaatgtatttattgttaaaccattataaatacaa 33896770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 11493880 - 11493946
Alignment:
Q  28 aagcattcaatgcactt-attgtaacaccattataaatacaa-tagtgtgatctcattatagacaca 92  Q
    ||||||||||||||||| |||| || ||||||||||||||||   ||||| ||||||||||||||||    
T  11493880 aagcattcaatgcactttattgcaaaaccattataaatacaaggtgtgtggtctcattatagacaca 11493946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 3304647 - 3304711
Alignment:
Q  28 aagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacaca 92  Q
    |||||||||||||| ||||||||| |||| |||||||||||   |||||| |||||||||||||||    
T  3304647 aagcattcaatgcaattattgtaaaacca-tataaatacaaggtgtgtgacctcattatagacaca 3304711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 35942120 - 35942057
Alignment:
Q  25 attaagcattcaatgcacttattgtaacaccattataaatacaatagtgtgatctcattatagac 89  Q
    ||||||||| ||||| | |||||||||||| |||||||||||||   |||||||||| |||||||    
T  35942120 attaagcatccaatgtatttattgtaacactattataaatacaa-gttgtgatctcagtatagac 35942057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 23839386 - 23839493
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacagagagtttacacagacttcaca 116  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| ||||||||| |||||| || ||||||    
T  23839386 cttactaattaagcattcaatgcacttattgtaaaaccattataaatacaagttgtgtgatctcattatagacgcacagagagcttacacggatttcaca 23839485  T
Q  117 tattttac 124  Q
    ||||||||    
T  23839486 tattttac 23839493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 1011501 - 1011608
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaata-gtgtgatctcattatagacacacagagagtttacacagacttcaca 116  Q
    |||||||| ||||||||||||| | |||||||||  |||||||||||||||   ||||||||||||||||||||||||||| ||||||||||||||||||    
T  1011501 cttactaaataagcattcaatgtatttattgtaaagccattataaatacaagctgtgtgatctcattatagacacacagagggtttacacagacttcaca 1011600  T
Q  117 tattttac 124  Q
    ||||||||    
T  1011601 tattttac 1011608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 1012363 - 1012470
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaata-gtgtgatctcattatagacacacagagagtttacacagacttcaca 116  Q
    |||||||| ||||||||||||| | |||||||||  |||||||||||||||   ||||||||||||||||||||||||||| ||||||||||||||||||    
T  1012363 cttactaaataagcattcaatgtatttattgtaaagccattataaatacaagctgtgtgatctcattatagacacacagagggtttacacagacttcaca 1012462  T
Q  117 tattttac 124  Q
    ||||||||    
T  1012463 tattttac 1012470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 22797609 - 22797685
Alignment:
Q  19 ttactaattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacaca 94  Q
    ||||| ||||||||||||||| | ||||||||| ||||||||||||||||   ||||||||||||||||||||||||    
T  22797609 ttactcattaagcattcaatgtatttattgtaaaaccattataaatacaaggtgtgtgatctcattatagacacaca 22797685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 7932376 - 7932450
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaat-agtgtgatctcattatagacac 91  Q
    |||||| ||||||||||||||  | ||||||||| | |||||||||||||||  |||||||||||||||||||||    
T  7932376 cttactcattaagcattcaattaatttattgtaaaatcattataaatacaatgtgtgtgatctcattatagacac 7932450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 24234807 - 24234865
Alignment:
Q  174 ttttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaacaaaatat 232  Q
    ||||||| ||||||| ||| || || | |||||||||||||||||||||||||||||||    
T  24234807 ttttcattaaaaatatccatgtgcaacaagaaaagtcatcaataaaagtaacaaaatat 24234865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 39894887 - 39894962
Alignment:
Q  20 tactaattaagcattcaatgcacttattgtaacaccattataaatacaa---tagtgtgatctcattatagacaca 92  Q
    |||| ||||||||||||||||| ||||||||| | | ||||||||||||     ||||||||||||||||||||||    
T  39894887 tactcattaagcattcaatgcatttattgtaaaatcgttataaatacaaggtgtgtgtgatctcattatagacaca 39894962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 38609408 - 38609460
Alignment:
Q  43 ttattgtaacaccattataaatacaata-gtgtgatctcattatagacacaca 94  Q
    ||||||||| ||||||||||||||||   ||||||||||||||||||||||||    
T  38609408 ttattgtaaaaccattataaatacaaggtgtgtgatctcattatagacacaca 38609460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 322031 - 322102
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattataga 88  Q
    |||||||| ||||||||||||| | |||||||||   ||||||||||||||   ||||||||||||||||||    
T  322031 cttactaaataagcattcaatgtatttattgtaaaggcattataaatacaaggtgtgtgatctcattataga 322102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 28369368 - 28369418
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaa 68  Q
    ||||||| ||||||| |||||| | ||||||||| ||||||||||||||||    
T  28369368 cttactagttaagcactcaatgtatttattgtaaaaccattataaatacaa 28369418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 29907266 - 29907316
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaa 68  Q
    |||||| | ||||||||||||||| ||| ||||| ||||||||||||||||    
T  29907266 cttacttactaagcattcaatgcatttagtgtaaaaccattataaatacaa 29907316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 39437267 - 39437374
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaata-gtgtgatctcattatagacacacagagagtttacacagacttcaca 116  Q
    |||||||| ||||||||||||| | |||||||||  |||||||||||||||   |||||||||||||||||| ||||||||||||||| |||||||||||    
T  39437267 cttactaaataagcattcaatgtatttattgtaaagccattataaatacaagctgtgtgatctcattatagatacacagagagtttacccagacttcaca 39437366  T
Q  117 tattttac 124  Q
    ||||||||    
T  39437367 tattttac 39437374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 32476674 - 32476571
Alignment:
Q  21 actaattaagcattcaatgcacttattgtaacaccattataaatacaatagtgtgatctcattatagacacacagagagtttacacagacttcacatatt 120  Q
    ||||| || |||||||||||| |||||||||  ||| |||||||| ||  |||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  32476674 actaaatatgcattcaatgcatttattgtaaacccactataaatagaagggtgtgatctcattatagagacacacagagtttacacagacttcacatatt 32476575  T
Q  121 ttac 124  Q
    ||||    
T  32476574 ttac 32476571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 49529579 - 49529684
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacagagagtttacacagacttcaca 116  Q
    |||||||| ||||||||||||| | |||| ||||  |||||||||||||||    ||||||||||||||||||||||  |||||||||||||||||||||    
T  49529579 cttactaaataagcattcaatgtatttatggtaaagccattataaatacaagctttgtgatctcattatagacacac--agagtttacacagacttcaca 49529676  T
Q  117 tattttac 124  Q
    ||||||||    
T  49529677 tattttac 49529684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 50848204 - 50848100
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaata-gtgtgatctcattatagacacacagagagtttacacagacttcaca 116  Q
    |||||||||||||||||||||| | || ||||||  |||||||| ||||||   | |||||||||||||||||||||| |||||||| ||||||||||||    
T  50848204 cttactaattaagcattcaatgtattttttgtaaagccattatagatacaaggtgagtgatctcattatagacacacacagagtttagacagacttcaca 50848105  T
Q  117 tattt 121  Q
    |||||    
T  50848104 tattt 50848100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 44897977 - 44897902
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacaca 92  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||||    
T  44897977 cttactcattaagcattcaatgcacttattgtaaaaccattataaatacaaggtgtgtgatctcattatagacaca 44897902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 47442102 - 47442023
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatac-aatagtgtgatctcattatagacacacaga 96  Q
    |||||||||||||||||||||||| ||||||||| |||||| ||||||| || ||||||||||| |||||||||||||||    
T  47442102 cttactaattaagcattcaatgcatttattgtaaaaccattgtaaatacaaagagtgtgatctcgttatagacacacaga 47442023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 37078356 - 37078441
Alignment:
Q  19 ttactaattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacagagagttta 103  Q
    ||||||| ||||||||||||| | |||||||||  |||||||||||||||   |||||||||||||||||||||||||||| ||||    
T  37078356 ttactaaataagcattcaatgtatttattgtaaagccattataaatacaagctgtgtgatctcattatagacacacagagaattta 37078441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 41224026 - 41224099
Alignment:
Q  21 actaattaagcattcaatgcacttattgtaacaccattataaatacaatagtgtgatctcattatagacacaca 94  Q
    ||||| ||||||||||||| | ||||||||| ||||| ||||||||||  ||||||||||||||||||||||||    
T  41224026 actaaataagcattcaatgtatttattgtaaaaccatcataaatacaagggtgtgatctcattatagacacaca 41224099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 20704876 - 20704819
Alignment:
Q  175 tttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaacaaaatat 232  Q
    |||||| || || |||||||||||||||||||| ||||||||||| ||||||||||||    
T  20704876 tttcattaagaaaacccaagtacatctagaaaattcatcaataaaggtaacaaaatat 20704819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 37079084 - 37079159
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacaca 92  Q
    |||||||| ||||||||||||| | |||||||||  |||||||||||||||   |||||||||||||||| |||||    
T  37079084 cttactaaataagcattcaatgtatttattgtaaagccattataaatacaagctgtgtgatctcattatacacaca 37079159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 6848696 - 6848624
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagac 89  Q
    |||||| |||||||||||| |||| ||||||||| |||||||  |||||||   |||||||||||||||||||    
T  6848696 cttactcattaagcattcattgcatttattgtaaaaccattaataatacaaggtgtgtgatctcattatagac 6848624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 13039222 - 13039187
Alignment:
Q  197 catctagaaaagtcatcaataaaagtaacaaaatat 232  Q
    ||||||||||| ||||||||||||||||||||||||    
T  13039222 catctagaaaactcatcaataaaagtaacaaaatat 13039187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 14796730 - 14796667
Alignment:
Q  157 gaaaacttctgaacgacttttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaa 220  Q
    |||||||||||||||| ||||||| || | || |||||||||||  ||||| ||||||||||||    
T  14796730 gaaaacttctgaacgatttttcattaacagtaaccaagtacatcgtgaaaaatcatcaataaaa 14796667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 22384067 - 22384143
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacac 93  Q
    |||| ||||||||||||||||| | ||||| ||  ||||||||||||||||   ||||| |||||| ||||||||||    
T  22384067 cttattaattaagcattcaatgtatttattctacaaccattataaatacaaggtgtgtggtctcatcatagacacac 22384143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 15869433 - 15869354
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacaga 96  Q
    |||||| ||||||||||||||| | ||||||||| ||||||||||||||||   ||||| ||||||||||||||||||||    
T  15869433 cttactcattaagcattcaatgtatttattgtaaaaccattataaatacaaggcgtgtgttctcattatagacacacaga 15869354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 20591953 - 20591902
Alignment:
Q  43 ttattgtaacaccattataaatacaatagtgtgatctcattatagacacaca 94  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  20591953 ttattgtaacactagtataaatacaatagtgtgatctcattatagacacaca 20591902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 20595580 - 20595522
Alignment:
Q  32 attcaatgcacttattgtaacaccattataaatacaatagtgtgatctcattatagacaca 92  Q
    |||||||| | ||||||||||||   |||||||||||||||||||||||||||||||||||    
T  20595580 attcaatgtatttattgtaacacg--tataaatacaatagtgtgatctcattatagacaca 20595522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 12895613 - 12895542
Alignment:
Q  157 gaaaacttctgaacgacttttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaacaaa 228  Q
    |||||||||||||| | ||||||| || ||||||||||||||||  ||||| ||||||||||| || |||||    
T  12895613 gaaaacttctgaacaatttttcattaagaatacccaagtacatcgtgaaaaatcatcaataaacgttacaaa 12895542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 32128 - 32072
Alignment:
Q  175 tttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaacaaaata 231  Q
    |||||| |||||||||||||||||||| || || |||||||||||||||||| ||||    
T  32128 tttcattaaaaatacccaagtacatcttgagaaatcatcaataaaagtaacataata 32072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 20269942 - 20269863
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaatacaa-tagtgtgatctcattatagacacacaga 96  Q
    ||||||||||||| |||||||| | ||||||||| | ||||||| ||||||   ||||||||||||||||||| ||||||    
T  20269942 cttactaattaagtattcaatgtatttattgtaaaatcattatagatacaaggtgtgtgatctcattatagactcacaga 20269863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 48596845 - 48596778
Alignment:
Q  27 taagcattcaatgcacttattgtaacaccattataaatacaatagtgtgatctcattatagacacaca 94  Q
    ||||||||||| | | ||||||||  ||||||||||||| ||  ||||||||||||||||||||||||    
T  48596845 taagcattcaaagtatttattgtataaccattataaatagaagggtgtgatctcattatagacacaca 48596778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 55253867 - 55253809
Alignment:
Q  174 ttttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaagtaacaaaatat 232  Q
    ||||||| ||||||| ||| || |||| ||||||||||||||||||||| |||||||||    
T  55253867 ttttcattaaaaataaccatgtgcatcgagaaaagtcatcaataaaagtgacaaaatat 55253809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 28767508 - 28767459
Alignment:
Q  18 cttactaattaagcattcaatgcacttattgtaacaccattataaataca 67  Q
    |||||| |||||||||||||| || ||||||||| |||||||||||||||    
T  28767508 cttactcattaagcattcaatacatttattgtaaaaccattataaataca 28767459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 43001 - 43064
Alignment:
Q  157 gaaaacttctgaacgacttttcatcaaaaatacccaagtacatctagaaaagtcatcaataaaa 220  Q
    |||||||||||||||| ||||||| || | || |||||||||||  ||||| ||||||||||||    
T  43001 gaaaacttctgaacgatttttcattaacagtaaccaagtacatcgtgaaaaatcatcaataaaa 43064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University