View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8356_low_6 (Length: 209)

Name: NF8356_low_6
Description: NF8356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8356_low_6
NF8356_low_6
[»] chr4 (3 HSPs)
chr4 (37-193)||(15481335-15481491)
chr4 (37-124)||(15481162-15481249)
chr4 (37-77)||(10421461-10421501)
[»] chr3 (2 HSPs)
chr3 (37-193)||(38337241-38337397)
chr3 (37-124)||(38337070-38337157)
[»] chr8 (2 HSPs)
chr8 (37-193)||(43924782-43924938)
chr8 (34-124)||(43924608-43924698)
[»] chr6 (2 HSPs)
chr6 (37-124)||(27763540-27763627)
chr6 (140-193)||(27763712-27763765)
[»] scaffold0189 (1 HSPs)
scaffold0189 (37-124)||(12313-12400)
[»] chr1 (1 HSPs)
chr1 (37-124)||(14924801-14924884)
[»] chr5 (1 HSPs)
chr5 (37-88)||(4554783-4554835)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 37 - 193
Target Start/End: Complemental strand, 15481491 - 15481335
Alignment:
Q  37 cactcaacaacaacatgcactgctacttcaactctctttcttcctctcattctgacccccaccgcacaccactaggctgctgccggaattgttgaagcat 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  15481491 cactcaacaacaacatgcactgctacttcaactctctttcttcctctcattcttaccaccaccgcacaccactaggctgctgccggaattgttgaagcat 15481392  T
Q  137 ggtaattgagtgccatcactctgatcctcttatactcaacaccaaatataaatgaag 193  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  15481391 ggtaattgagtgccatcactctgttcctcttatactcaacaccagatataaatgaag 15481335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 15481162 - 15481249
Alignment:
Q  37 cactcaacaacaacatgcactgctacttcaactctctttcttcctctcattctgacccccaccgcacaccactaggctgctgccggaa 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| |||||||||||    
T  15481162 cactcaacaacaacatgcactgctacttcaactctctttcttcctctcattttgaccaccaccacacaccactaggttgctgccggaa 15481249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 10421501 - 10421461
Alignment:
Q  37 cactcaacaacaacatgcactgctacttcaactctctttct 77  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  10421501 cactcaacaacaacatgcactgctatttcaactctctttct 10421461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 37 - 193
Target Start/End: Complemental strand, 38337397 - 38337241
Alignment:
Q  37 cactcaacaacaacatgcactgctacttcaactctctttcttcctctcattctgacccccaccgcacaccactaggctgctgccggaattgttgaagcat 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  38337397 cactcaacaacaacatgcactgctacttcaactctctttcttcctctcattctaaccaccaccgcacaccactaggctgctgccggaattgttgaagcat 38337298  T
Q  137 ggtaattgagtgccatcactctgatcctcttatactcaacaccaaatataaatgaag 193  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  38337297 ggtaattgagtgccatcactctgttcctcttatactcaacaccagatataaatgaag 38337241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 38337070 - 38337157
Alignment:
Q  37 cactcaacaacaacatgcactgctacttcaactctctttcttcctctcattctgacccccaccgcacaccactaggctgctgccggaa 124  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38337070 cactcaacaacaacatgaactgctacttcaactctctttcttcctctcattctgaccaccaccgcacaccactaggctgctgccggaa 38337157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 2e-69; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 37 - 193
Target Start/End: Complemental strand, 43924938 - 43924782
Alignment:
Q  37 cactcaacaacaacatgcactgctacttcaactctctttcttcctctcattctgacccccaccgcacaccactaggctgctgccggaattgttgaagcat 136  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43924938 cactcaacaacaacatgcaccgctacttcaactctcttttttcctctcattctgaccaccaccgcacaccactaggctgctgccggaattgttgaagcat 43924839  T
Q  137 ggtaattgagtgccatcactctgatcctcttatactcaacaccaaatataaatgaag 193  Q
    |||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  43924838 ggtaatcgagtgccatcactctgttcctcttatactcaacaccagatataaatgaag 43924782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 43924608 - 43924698
Alignment:
Q  34 ccacactcaacaacaacatgcactgctacttcaactctctttcttcctctcattctgacccccaccgcacaccactaggctgctgccggaa 124  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  43924608 ccacactcaacaacaacatgaactgctacttcaactctctttcttcctctcattctgaccatcaccgcacaccactaggctgctgccggaa 43924698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 27763540 - 27763627
Alignment:
Q  37 cactcaacaacaacatgcactgctacttcaactctctttcttcctctcattctgacccccaccgcacaccactaggctgctgccggaa 124  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27763540 cactcaacaacaacatgcaccgctacttcaactctctttcttcctctcattctgaccaccaccgcacaccactaggctgctgccggaa 27763627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 27763765 - 27763712
Alignment:
Q  140 aattgagtgccatcactctgatcctcttatactcaacaccaaatataaatgaag 193  Q
    |||||| ||||||||||| | |||||||||||||||||||| ||||||||||||    
T  27763765 aattgaatgccatcactccgttcctcttatactcaacaccagatataaatgaag 27763712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 12313 - 12400
Alignment:
Q  37 cactcaacaacaacatgcactgctacttcaactctctttcttcctctcattctgacccccaccgcacaccactaggctgctgccggaa 124  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12313 cactcaacaacaacatgcaccactacttcaactctctttcttcctctcattctgaccaccaccgcacaccactaggctgctgccggaa 12400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 14924801 - 14924884
Alignment:
Q  37 cactcaacaacaacatgcactgctacttcaactctctttcttcctctcattctgacccccaccgcacaccactaggctgctgccggaa 124  Q
    |||||||||||||||||||| |||||||||||||||||    ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  14924801 cactcaacaacaacatgcaccgctacttcaactctctt----cctctcattctgaccaccaccacacaccactaggctgctgccggaa 14924884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 4554783 - 4554835
Alignment:
Q  37 cactcaacaacaacatgc-actgctacttcaactctctttcttcctctcattc 88  Q
    |||||||||||||||||| | |||| |||||| ||||||||||||||||||||    
T  4554783 cactcaacaacaacatgcgattgctgcttcaagtctctttcttcctctcattc 4554835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University