View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8357_high_1 (Length: 438)
Name: NF8357_high_1
Description: NF8357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8357_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 432
Target Start/End: Original strand, 8536670 - 8537085
Alignment:
| Q |
17 |
attgtcaacattcaaaaatcaaaatctcatcatgcagaccaagaacactgctgtcgaactctatttcggatgtaaataaaatcaaaaccatataatgaga |
116 |
Q |
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| T |
8536670 |
attgtcaacattcaaaaatcaaaatctcatcatgcagaccaagaacactgttgtcgaactctatttcggatgtaaataaaatcaaaaccatataatgaga |
8536769 |
T |
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| Q |
117 |
tccataacatcaaatagaattcagttagtttgaagatcaatctcaagtttaatgatactcaaaataacaaaagataaactagcccactatagcatatttt |
216 |
Q |
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| T |
8536770 |
tccataacatcaaatagaattcggttagtttgaagatcaatctcaagtttaatgatactcaaaataacaaaagataaactagcccactatagcatatttt |
8536869 |
T |
|
| Q |
217 |
accaaaatgataaaatatgtaatcaaagaaacaaaataagtaggtccacagttatagaaacggatgcaaagaaaattggtaaaaaactactaactataac |
316 |
Q |
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| T |
8536870 |
accaaaatgataaaatatgtaatcaaagaaacaaaataagtaggtccacagttatagaaacggatgcaaagaaaattggtaaaaaactactaactataac |
8536969 |
T |
|
| Q |
317 |
tgaatcagtatcttaatcaacctaaccatttcttttcatgcccaaagtagattcagtgatgctctcaagcttcttcaacatgttcacaaacacatatgtt |
416 |
Q |
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| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8536970 |
taaaacagtatcttaatcaacctaaccattttttttcatgcccaaagtagattcagtgatgctctcaagcttcttcaacatgttcacaaacacatatgtt |
8537069 |
T |
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| Q |
417 |
tcttcattcttctcac |
432 |
Q |
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| T |
8537070 |
tcttcattcttgtcac |
8537085 |
T |
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