View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8357_low_3 (Length: 370)

Name: NF8357_low_3
Description: NF8357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8357_low_3
NF8357_low_3
[»] chr6 (9 HSPs)
chr6 (1-230)||(136678-136907)
chr6 (1-228)||(30231529-30231756)
chr6 (83-228)||(1752372-1752516)
chr6 (306-370)||(136983-137047)
chr6 (306-370)||(30231823-30231887)
chr6 (45-173)||(18240495-18240623)
chr6 (1-56)||(138216-138271)
chr6 (1-56)||(146237-146292)
chr6 (1-56)||(30232916-30232971)
[»] chr2 (8 HSPs)
chr2 (1-226)||(1149028-1149253)
chr2 (306-370)||(1148912-1148976)
chr2 (48-137)||(9472722-9472811)
chr2 (1-56)||(1147800-1147855)
chr2 (68-137)||(2277398-2277467)
chr2 (68-137)||(21664920-21664989)
chr2 (68-137)||(34147254-34147323)
chr2 (22-126)||(26204691-26204795)
[»] chr7 (12 HSPs)
chr7 (1-207)||(26135692-26135898)
chr7 (41-173)||(3332050-3332182)
chr7 (306-368)||(26145517-26145579)
chr7 (10-56)||(26146717-26146763)
chr7 (122-219)||(9559220-9559316)
chr7 (1-60)||(10957160-10957219)
chr7 (127-206)||(16830969-16831047)
chr7 (83-134)||(28325202-28325253)
chr7 (83-182)||(43098178-43098277)
chr7 (112-182)||(22265770-22265840)
chr7 (68-137)||(9662166-9662235)
chr7 (125-182)||(23331220-23331277)
[»] chr5 (4 HSPs)
chr5 (42-137)||(10977114-10977209)
chr5 (65-137)||(20539275-20539347)
chr5 (68-137)||(32757943-32758012)
chr5 (1-60)||(28702620-28702679)
[»] chr3 (3 HSPs)
chr3 (44-137)||(5123275-5123368)
chr3 (70-130)||(48254828-48254888)
chr3 (73-134)||(48867365-48867426)
[»] scaffold0086 (1 HSPs)
scaffold0086 (68-216)||(46652-46799)
[»] chr4 (8 HSPs)
chr4 (108-219)||(40445950-40446060)
chr4 (82-206)||(10168643-10168766)
chr4 (127-227)||(52793297-52793396)
chr4 (50-137)||(668486-668573)
chr4 (83-130)||(56296323-56296370)
chr4 (122-228)||(24107349-24107454)
chr4 (68-137)||(13533190-13533259)
chr4 (69-130)||(29663758-29663819)
[»] chr8 (3 HSPs)
chr8 (114-222)||(16341210-16341317)
chr8 (128-205)||(13016815-13016891)
chr8 (73-130)||(24069385-24069442)
[»] chr1 (4 HSPs)
chr1 (69-206)||(34258572-34258709)
chr1 (22-206)||(30934896-30935079)
chr1 (127-175)||(11661747-11661795)
chr1 (68-134)||(16757456-16757522)


Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 136678 - 136907
Alignment:
Q  1 cataacttctaaaatcaatgatttggtcccttacaaatgtctccgttagtcaaattagtcatattccgttaattttaacatcaaatgtctaaggtggacc 100  Q
    |||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  136678 cataacttttaaaatcaacgttttggtcccttacaaatgtctccgttagtcaaattagtcatattccgttaattttaacatcaaatgtctaaggtggacc 136777  T
Q  101 gacatggtaagtggtctaccatagaccttattaatttatgtaatcttagctcttagatcattttaaaacaaaataaaccctttagattatgcaagaccat 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  136778 gacatggtaagtggtctaccatagaccttattaatttatttaatcttagctcttagatcattttaaaacaaaataaaccctttagattatgcaagaccat 136877  T
Q  201 tgaatccactaatgaaccatcatcacataa 230  Q
    ||||||||||||||||||||||||||||||    
T  136878 tgaatccactaatgaaccatcatcacataa 136907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 30231529 - 30231756
Alignment:
Q  1 cataacttctaaaatcaatgatttggtcccttacaaatgtctccgttagtcaaattagtcatattccgttaattttaacatcaaatgtctaaggtggacc 100  Q
    |||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  30231529 cataacttctaaaatcaacgttttggtcccttacaaatgtctctgttagtcaaattagtcctattccgttaattttaacatcaaatgtctaaggtgaacc 30231628  T
Q  101 gacatggtaagtggtctaccatagaccttattaatttatgtaatcttagctcttagatcattttaaaacaaaataaaccctttagattatgcaagaccat 200  Q
     ||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  30231629 aacatggtaagtggtccaccatagaccttgttaatttatttaatcttagctcttagatcactttaaaacaaaataaacccttaagattatgcaagaccat 30231728  T
Q  201 tgaatccactaatgaaccatcatcacat 228  Q
    ||||||||||||| ||||||||||||||    
T  30231729 tgaatccactaataaaccatcatcacat 30231756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 83 - 228
Target Start/End: Complemental strand, 1752516 - 1752372
Alignment:
Q  83 aaatgtctaaggtggaccgacatggtaagtggtctaccatagaccttattaatttatgtaatcttagctcttagatcattttaaaacaaaataaaccctt 182  Q
    |||||||||| ||||||| |||| ||| |||  ||||| |||||||||||||||||| |||| ||||| |||  |||||||| ||| |||||| |||| |    
T  1752516 aaatgtctaatgtggaccaacattgtaggtgacctaccgtagaccttattaatttatttaattttagccctttaatcattttgaaataaaatagaccc-t 1752418  T
Q  183 tagattatgcaagaccattgaatccactaatgaaccatcatcacat 228  Q
    ||||| |||||||||||||||||| | |||||||||| || |||||    
T  1752417 tagatcatgcaagaccattgaatctaataatgaaccaccaacacat 1752372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 306 - 370
Target Start/End: Original strand, 136983 - 137047
Alignment:
Q  306 gctcaattaaacccagaacacctatactcatttaaacccaaatcttattatgacaacaagtgtga 370  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  136983 gctcaattaaacctagaacacttatactcatttaaacccaaatcttattatgacaacaagtgtga 137047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 306 - 370
Target Start/End: Original strand, 30231823 - 30231887
Alignment:
Q  306 gctcaattaaacccagaacacctatactcatttaaacccaaatcttattatgacaacaagtgtga 370  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30231823 gctcatttaaacccataacacctatactcatttaaacccaaatcttattatgacaacaagtgtga 30231887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 45 - 173
Target Start/End: Original strand, 18240495 - 18240623
Alignment:
Q  45 gttagtcaaattagtcatattccgttaattttaacatcaaatgtctaaggtggaccgacatggtaagtggtctaccatagaccttattaatttatgtaat 144  Q
    |||||||| ||||||| | ||||||||||||||| || |||||| ||||||| ||| | |||||||||| || ||| ||||| |||||||||||| ||||    
T  18240495 gttagtcatattagtcctcttccgttaattttaatattaaatgtttaaggtgcaccaatatggtaagtgatccaccctagacgttattaatttatttaat 18240594  T
Q  145 cttagctcttagatcattttaaaacaaaa 173  Q
     |||||  ||  |||||||| ||||||||    
T  18240595 tttagccttttaatcatttttaaacaaaa 18240623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 138271 - 138216
Alignment:
Q  1 cataacttctaaaatcaatgatttggtcccttacaaatgtctccgttagtcaaatt 56  Q
    |||||||||||||||||| | || ||||||||||||||||| ||||| ||||||||    
T  138271 cataacttctaaaatcaacgtttcggtcccttacaaatgtcaccgttggtcaaatt 138216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 146292 - 146237
Alignment:
Q  1 cataacttctaaaatcaatgatttggtcccttacaaatgtctccgttagtcaaatt 56  Q
    |||||||||||||||||| | || ||||||||||||||||| ||||| ||||||||    
T  146292 cataacttctaaaatcaacgtttcggtcccttacaaatgtcaccgttggtcaaatt 146237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 30232971 - 30232916
Alignment:
Q  1 cataacttctaaaatcaatgatttggtcccttacaaatgtctccgttagtcaaatt 56  Q
    |||||||||||||||||| | || ||||||||||||||||| | || |||||||||    
T  30232971 cataacttctaaaatcaacgtttcggtcccttacaaatgtcactgtaagtcaaatt 30232916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 1149253 - 1149028
Alignment:
Q  1 cataacttctaaaatcaatgatttggtcccttacaaatgtctccgttagtcaaattagtcatattccgttaattttaacatcaaatgtctaaggtggacc 100  Q
    |||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||  ||||||    
T  1149253 cataacttctaaaatcaacgttttggtcccttacaaaagtctccgttagtcaaattagtcttattccgttaattttaacatcaaatatctaatatggacc 1149154  T
Q  101 gacatggtaagtggtctaccatagaccttattaatttatgtaatcttagctcttagatcattttaaaacaaaataaaccctttagattatgcaagaccat 200  Q
    |||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1149153 gacatggtaaatggtccaccatagaccttattaatttatttaatcttagctcttagatcattttaaaacaaaataaatcctttagattatgcaagaccat 1149054  T
Q  201 tgaatccactaatgaaccatcatcac 226  Q
    |||||||||| |||||||||||||||    
T  1149053 tgaatccactgatgaaccatcatcac 1149028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 306 - 370
Target Start/End: Complemental strand, 1148976 - 1148912
Alignment:
Q  306 gctcaattaaacccagaacacctatactcatttaaacccaaatcttattatgacaacaagtgtga 370  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1148976 gctcatttaaacccagaacacctatactcatttaaacccaaatcttattatgaaaacaagtgtga 1148912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 137
Target Start/End: Original strand, 9472722 - 9472811
Alignment:
Q  48 agtcaaattagtcatattccgttaattttaacatcaaatgtctaaggtggaccgacatggtaagtggtctaccatagaccttattaattt 137  Q
    ||||||||| ||| | ||||||||||||||||  ||||| |||||| |||||| |||| ||| ||||||||||||||||| |||||||||    
T  9472722 agtcaaattggtcctgttccgttaattttaactccaaatatctaagatggaccaacattgtatgtggtctaccatagaccatattaattt 9472811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 1147800 - 1147855
Alignment:
Q  1 cataacttctaaaatcaatgatttggtcccttacaaatgtctccgttagtcaaatt 56  Q
    |||||||||||||||||| | || |||||||||||||| || ||||||||||||||    
T  1147800 cataacttctaaaatcaacgtttcggtcccttacaaatatcaccgttagtcaaatt 1147855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 2277467 - 2277398
Alignment:
Q  68 gttaattttaacatcaaatgtctaaggtggaccgacatggtaagtggtctaccatagaccttattaattt 137  Q
    ||||| ||||||  |||||||||| |||||||| ||||||||  | ||| ||||||||||||||||||||    
T  2277467 gttaactttaaccccaaatgtctatggtggaccaacatggtagatagtccaccatagaccttattaattt 2277398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 21664920 - 21664989
Alignment:
Q  68 gttaattttaacatcaaatgtctaaggtggaccgacatggtaagtggtctaccatagaccttattaattt 137  Q
    ||||| |||||| ||||||||||| |||||||| |||| ||| |||||| | |||||||||| |||||||    
T  21664920 gttaagtttaacttcaaatgtctatggtggaccaacattgtaggtggtcaatcatagaccttgttaattt 21664989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 34147254 - 34147323
Alignment:
Q  68 gttaattttaacatcaaatgtctaaggtggaccgacatggtaagtggtctaccatagaccttattaattt 137  Q
    ||||| ||||||  |||||||||| |||||||| ||||||||  | ||| ||||||||||||||||||||    
T  34147254 gttaactttaaccccaaatgtctatggtggaccaacatggtagatagtccaccatagaccttattaattt 34147323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 26204795 - 26204691
Alignment:
Q  22 tttggtcccttacaaatgtctccgttagtcaaattagtcatattccgttaattttaacatcaaatgtctaaggtggaccgacatggtaagtggtctacca 121  Q
    |||||||||| | |||| |||| |||||| |||||||||   || | ||||||||||||| |||||||||| ||||||| | ||| || |||||| ||||    
T  26204795 tttggtccctcaaaaatatctctgttagttaaattagtctcgtttcattaattttaacattaaatgtctaaagtggaccaatatgataggtggtccacca 26204696  T
Q  122 tagac 126  Q
     ||||    
T  26204695 aagac 26204691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 171; Significance: 9e-92; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 26135692 - 26135898
Alignment:
Q  1 cataacttctaaaatcaatgatttggtcccttacaaatgtctccgttagtcaaattagtcatattccgttaattttaacatcaaatgtctaaggtggacc 100  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||| ||||||    
T  26135692 cataacttctaaaatcaacgttttggtcccttacaaatgtctccgttagtcaaattagtcctattatgttaattttaacatcaaatgtctaagatggacc 26135791  T
Q  101 gacatggtaagtggtctaccatagaccttattaatttatgtaatcttagctcttagatcattttaaaacaaaataaaccctttagattatgcaagaccat 200  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26135792 gacatggtaagtggtccaccatagaccttattaatttatttaatcttagctcttagataattttaaaacaaaataaaccctttagattatgcaagaccat 26135891  T
Q  201 tgaatcc 207  Q
    |||||||    
T  26135892 tgaatcc 26135898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 41 - 173
Target Start/End: Complemental strand, 3332182 - 3332050
Alignment:
Q  41 ctccgttagtcaaattagtcatattccgttaattttaacatcaaatgtctaaggtggaccgacatggtaagtggtctaccatagaccttattaatttatg 140  Q
    |||||||||||| ||||||| | |||||||||||||||||| |||||| ||||||| ||| | |||||||||| |  |||||| |||||||||||||||     
T  3332182 ctccgttagtcatattagtcctcttccgttaattttaacattaaatgtttaaggtgcaccaatatggtaagtgatacaccatataccttattaatttatt 3332083  T
Q  141 taatcttagctcttagatcattttaaaacaaaa 173  Q
    |||| ||||| ||| ||||||||| ||||||||    
T  3332082 taattttagccctttgatcatttttaaacaaaa 3332050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 306 - 368
Target Start/End: Original strand, 26145517 - 26145579
Alignment:
Q  306 gctcaattaaacccagaacacctatactcatttaaacccaaatcttattatgacaacaagtgt 368  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26145517 gctcatttaaacccagaacacctatactcatttaaactcaaatcttattatgacaacaagtgt 26145579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 26146763 - 26146717
Alignment:
Q  10 taaaatcaatgatttggtcccttacaaatgtctccgttagtcaaatt 56  Q
    ||||||||||| || ||||||||||||||||| ||||||||||||||    
T  26146763 taaaatcaatgtttcggtcccttacaaatgtcaccgttagtcaaatt 26146717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 9559220 - 9559316
Alignment:
Q  122 tagaccttattaatttatgtaatcttagctcttagatcattttaaaacaaaataaaccctttagattatgcaagaccattgaatccactaatgaacca 219  Q
    |||||||||||||||||| |||| |||||  || ||||||||| | |||||||| | || |||||| ||||||||| |||||||| | |||| |||||    
T  9559220 tagaccttattaatttatttaattttagccttttgatcattttgacacaaaataga-ccattagatcatgcaagactattgaatctaataataaacca 9559316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 10957219 - 10957160
Alignment:
Q  1 cataacttctaaaatcaatgatttggtcccttacaaatgtctccgttagtcaaattagtc 60  Q
    |||||||  |||||| || | |||||||||| | ||||||||||||||||||||||||||    
T  10957219 cataactcgtaaaattaacgttttggtccctaaaaaatgtctccgttagtcaaattagtc 10957160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 16831047 - 16830969
Alignment:
Q  127 cttattaatttatgtaatcttagctcttagatcattttaaaacaaaataaaccctttagattatgcaagaccattgaatc 206  Q
    ||||||||||||| |||| |||    || ||||||||||||||||||||||| | || ||| ||||||||||||||||||    
T  16831047 cttattaatttatataattttaagcatttgatcattttaaaacaaaataaactc-ttggatcatgcaagaccattgaatc 16830969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 28325202 - 28325253
Alignment:
Q  83 aaatgtctaaggtggaccgacatggtaagtggtctaccatagaccttattaa 134  Q
    |||||||||||||||||| || | ||| |||||||||||||||| |||||||    
T  28325202 aaatgtctaaggtggaccaactttgtaggtggtctaccatagactttattaa 28325253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 182
Target Start/End: Complemental strand, 43098277 - 43098178
Alignment:
Q  83 aaatgtctaaggtggaccgacatggtaagtggtctaccatagaccttattaatttatgtaatcttagctcttagatcattttaaaacaaaataaaccctt 182  Q
    |||||||||||||||||| |||| ||   || || |||||| || |||||||||||| |||| |||   ||| ||||||||| |||||||||| ||||||    
T  43098277 aaatgtctaaggtggaccaacattgttgatgatccaccataaactttattaatttatttaattttaatcctttgatcattttgaaacaaaatagaccctt 43098178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 182
Target Start/End: Original strand, 22265770 - 22265840
Alignment:
Q  112 tggtctaccatagaccttattaatttatgtaatcttagctcttagatcattttaaaacaaaataaaccctt 182  Q
    ||||| || ||| ||||||||||||||| |||| |||   ||| ||||||||| |||||||||||||||||    
T  22265770 tggtccacaataaaccttattaatttatttaatattaaacctttgatcattttgaaacaaaataaaccctt 22265840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 9662235 - 9662166
Alignment:
Q  68 gttaattttaacatcaaatgtctaaggtggaccgacatggtaagtggtctaccatagaccttattaattt 137  Q
    ||||| |||||| ||||||||||| |||||||| ||||  ||  | ||| ||||||||||||||||||||    
T  9662235 gttaaatttaacttcaaatgtctatggtggaccaacattatagatagtccaccatagaccttattaattt 9662166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 23331277 - 23331220
Alignment:
Q  125 accttattaatttatgtaatcttagctcttagatcattttaaaacaaaataaaccctt 182  Q
    ||||||||||||||| |||| ||| ||||| ||||||||| ||| |||||| ||||||    
T  23331277 accttattaatttatttaattttaactctttgatcattttgaaataaaatagaccctt 23331220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 42 - 137
Target Start/End: Original strand, 10977114 - 10977209
Alignment:
Q  42 tccgttagtcaaattagtcatattccgttaattttaacatcaaatgtctaaggtggaccgacatggtaagtggtctaccatagaccttattaattt 137  Q
    ||||| ||||||||| ||||| |||||||||||||||| ||||||||||||| |||||| |||| ||| ||||||||||||||||| |||||||||    
T  10977114 tccgtcagtcaaattggtcatgttccgttaattttaacttcaaatgtctaagatggaccaacattgtatgtggtctaccatagaccatattaattt 10977209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 20539347 - 20539275
Alignment:
Q  65 tccgttaattttaacatcaaatgtctaaggtggaccgacatggtaagtggtctaccatagaccttattaattt 137  Q
    |||||||| ||||||| ||||| | ||||||||||| | || ||| |||||||| ||||||||||||||||||    
T  20539347 tccgttaagtttaacaccaaatatataaggtggaccaatattgtaggtggtctatcatagaccttattaattt 20539275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 32757943 - 32758012
Alignment:
Q  68 gttaattttaacatcaaatgtctaaggtggaccgacatggtaagtggtctaccatagaccttattaattt 137  Q
    ||||| ||||||  |||||||||| |||||||| ||||||||  | ||| ||||||||||||||||||||    
T  32757943 gttaactttaaccccaaatgtctatggtggaccaacatggtagatagtccaccatagaccttattaattt 32758012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 28702620 - 28702679
Alignment:
Q  1 cataacttctaaaatcaatgatttggtcccttacaaatgtctccgttagtcaaattagtc 60  Q
    |||||||  |||||| || | |||||||||| | ||||||||||||||||||||||||||    
T  28702620 cataactcgtaaaattaacgttttggtccctaaaaaatgtctccgttagtcaaattagtc 28702679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 5123368 - 5123275
Alignment:
Q  44 cgttagtcaaattagtcatattccgttaattttaacatcaaatgtctaaggtggaccgacatggtaagtggtctaccatagaccttattaattt 137  Q
    ||||||| ||||| ||||| ||| |||||||||||| |||||||| |||| |||||| |||| ||| |||||||||||||||||||||||||||    
T  5123368 cgttagttaaattggtcatgttctgttaattttaacctcaaatgtttaagatggaccaacattgtatgtggtctaccatagaccttattaattt 5123275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 48254888 - 48254828
Alignment:
Q  70 taattttaacatcaaatgtctaaggtggaccgacatggtaagtggtctaccatagacctta 130  Q
    |||||||||||| |||||||||||||||||| ||||  || |||||| |||||| ||||||    
T  48254888 taattttaacattaaatgtctaaggtggaccaacattataggtggtccaccataaacctta 48254828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 48867426 - 48867365
Alignment:
Q  73 ttttaacatcaaatgtctaaggtggaccgacatggtaagtggtctaccatagaccttattaa 134  Q
    ||||||| | |||||||||||||| ||| || | ||| |||||||||||||||| |||||||    
T  48867426 ttttaaccttaaatgtctaaggtgaaccaactttgtaggtggtctaccatagactttattaa 48867365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 68 - 216
Target Start/End: Original strand, 46652 - 46799
Alignment:
Q  68 gttaattttaacatcaaatgtctaaggtggaccgacatggtaagtggtctaccatagaccttattaatttatgtaatcttagctcttagatcattttaaa 167  Q
    |||||||||||  | |||||||| ||||||| | | || ||| |||||| ||  |||||||||||||||||| |||| |||||  || ||||||||||||    
T  46652 gttaattttaaattaaaatgtcttaggtggatcaatattgtaggtggtccactgtagaccttattaatttatttaattttagcattttgatcattttaaa 46751  T
Q  168 acaaaataaaccctttagattatgcaagaccattgaatccactaatgaa 216  Q
    |||||||||| | ||| ||| ||||||||||||| |||| | |||||||    
T  46752 acaaaataaa-cttttggatcatgcaagaccatttaatctaataatgaa 46799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 219
Target Start/End: Original strand, 40445950 - 40446060
Alignment:
Q  108 taagtggtctaccatagaccttattaatttatgtaatcttagctcttagatcattttaaaacaaaataaaccctttagattatgcaagaccattgaatcc 207  Q
    ||||||||| ||| || |||||||  |||||| |||| ||||||||| |||||||||||||||||||| |||| |||||| ||||||||||||| ||||     
T  40445950 taagtggtccaccgtataccttatagatttatttaattttagctctttgatcattttaaaacaaaatagaccc-ttagatcatgcaagaccattcaatct 40446048  T
Q  208 actaatgaacca 219  Q
      ||||||||||    
T  40446049 tataatgaacca 40446060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 82 - 206
Target Start/End: Complemental strand, 10168766 - 10168643
Alignment:
Q  82 caaatgtctaaggtggaccgacatggtaagtggtctaccatagaccttattaatttatgtaatcttagctcttagatcattttaaaacaaaataaaccct 181  Q
    |||||||||| |||||||| ||||  ||  ||||| ||| || ||||||||||||||| |||| |||||  |||||||||||| ||||||||||  |||     
T  10168766 caaatgtctatggtggaccaacattatagatggtccaccgtacaccttattaatttatttaattttagcctttagatcattttgaaacaaaataggccc- 10168668  T
Q  182 ttagattatgcaagaccattgaatc 206  Q
    || ||| ||||||||||||| ||||    
T  10168667 ttggatcatgcaagaccatttaatc 10168643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 52793396 - 52793297
Alignment:
Q  127 cttattaatttatgtaatcttagctcttagatcattttaaaacaaaataaaccctttagattatgcaagaccattgaatccactaatgaaccatcatcac 226  Q
    ||||||||||||| |||| ||| | | | ||||||||| |||||||||||| | |||  || |||||||||||||||||| | || |||||||||| |||    
T  52793396 cttattaatttatttaattttaacaccttgatcattttgaaacaaaataaa-cttttgtatcatgcaagaccattgaatctaatagtgaaccatcaccac 52793298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 668486 - 668573
Alignment:
Q  50 tcaaattagtcatattccgttaattttaacatcaaatgtctaaggtggaccgacatggtaagtggtctaccatagaccttattaattt 137  Q
    ||||||| |||  |||||||||||||||||  ||||| | |||| |||| | |||| |||  ||||||| ||||||||||||||||||    
T  668486 tcaaattggtcccattccgttaattttaaccccaaatatttaagatggaacaacattgtagatggtctatcatagaccttattaattt 668573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 56296323 - 56296370
Alignment:
Q  83 aaatgtctaaggtggaccgacatggtaagtggtctaccatagacctta 130  Q
    |||||||||||||||||| ||||  || ||||||||||||||||||||    
T  56296323 aaatgtctaaggtggaccaacatcataggtggtctaccatagacctta 56296370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 228
Target Start/End: Original strand, 24107349 - 24107454
Alignment:
Q  122 tagaccttattaatttatgtaatcttagctcttagatcattttaaaacaaaataaaccctttagattatgcaagaccattgaatccactaatgaaccatc 221  Q
    |||||||||||| ||||| |||| ||||   ||  ||||||||||||||||||| ||| ||| ||| |||||||||||||| ||| | ||||| |||| |    
T  24107349 tagaccttattactttatttaattttagtcatttaatcattttaaaacaaaatagaccattt-gatcatgcaagaccattggatctaataatgcaccacc 24107447  T
Q  222 atcacat 228  Q
    | |||||    
T  24107448 agcacat 24107454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 13533259 - 13533190
Alignment:
Q  68 gttaattttaacatcaaatgtctaaggtggaccgacatggtaagtggtctaccatagaccttattaattt 137  Q
    ||||| |||||| ||||||||||| |||||||| ||||  ||  | ||| ||||||||||||||||||||    
T  13533259 gttaaatttaacttcaaatgtctatggtggaccaacattatagatagtccaccatagaccttattaattt 13533190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 29663758 - 29663819
Alignment:
Q  69 ttaattttaacatcaaatgtctaaggtggaccgacatggtaagtggtctaccatagacctta 130  Q
    ||||||||||||| |||||||||||||| ||| ||||  || |||||| |||||| ||||||    
T  29663758 ttaattttaacattaaatgtctaaggtgaaccaacattataggtggtccaccataaacctta 29663819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 16341210 - 16341317
Alignment:
Q  114 gtctaccatagaccttattaatttatgtaatcttagctcttagatcattttaaaacaaaataaaccctttagattatgcaagaccattgaatccactaat 213  Q
    ||||||| ||||||||||||| |||| |||| ||| ||||| ||||||||| || ||||||| |||| ||||||||||||| || |||||||| | ||||    
T  16341210 gtctaccgtagaccttattaacttatttaattttatctctttgatcattttgaagcaaaatagaccc-ttagattatgcaacactattgaatctaataat 16341308  T
Q  214 gaaccatca 222  Q
    || ||||||    
T  16341309 gacccatca 16341317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 13016891 - 13016815
Alignment:
Q  128 ttattaatttatgtaatcttagctcttagatcattttaaaacaaaataaaccctttagattatgcaagaccattgaat 205  Q
    |||||||||||| |||| ||| || || ||||||||||||| ||||| ||||| |||||| |||||||||||||||||    
T  13016891 ttattaatttatttaattttaactatttgatcattttaaaataaaattaaccc-ttagatcatgcaagaccattgaat 13016815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 24069442 - 24069385
Alignment:
Q  73 ttttaacatcaaatgtctaaggtggaccgacatggtaagtggtctaccatagacctta 130  Q
    ||||||||  |||||||||||||||||| ||||  || |||||| |||||||||||||    
T  24069442 ttttaacactaaatgtctaaggtggaccaacattataggtggtccaccatagacctta 24069385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 206
Target Start/End: Complemental strand, 34258709 - 34258572
Alignment:
Q  69 ttaattttaacatcaaatgtctaaggtggaccgacatggtaagtggtctaccatagaccttattaatttatgtaatcttagctctta-gatcattttaaa 167  Q
    ||||||||||| | |||| ||||||||||||| |||| ||| | |||| |||||| ||||||||||||||| |||| ||| |  |||  |||||||| ||    
T  34258709 ttaattttaacctaaaatatctaaggtggaccaacattgtatgcggtccaccataaaccttattaatttatttaattttaacctttattatcattttgaa 34258610  T
Q  168 acaaaataaaccctttagattatgcaagaccattgaatc 206  Q
    ||||||   ||||||| ||| |||||| |||||||||||    
T  34258609 acaaaaccgacccttt-gatcatgcaaaaccattgaatc 34258572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 206
Target Start/End: Complemental strand, 30935079 - 30934896
Alignment:
Q  22 tttggtcccttacaaatgtctccgttagtcaaattagtcatattccgttaattttaacatcaaatgtctaaggtggaccgacatggtaagtggtctacca 121  Q
    |||||||||||| | |||  ||| |||||||| ||  |||| ||  |||||||||||| | |||| ||||||||| ||| |||| ||  ||||||  ||     
T  30935079 tttggtcccttaaacatgcttccattagtcaatttgatcattttatgttaattttaacttaaaatatctaaggtgcaccaacattgttggtggtccgccg 30934980  T
Q  122 tagaccttattaatttatgtaatcttagctcttagatcattttaaaacaaaataaaccctttagattatgcaagaccattgaatc 206  Q
    || ||||||||||||||| | || ||| |  || ||||| ||| |||||||||||||||  ||||| |||||||| |||||||||    
T  30934979 taaaccttattaatttatttcattttatcattttgatcaatttgaaacaaaataaaccc-ctagatcatgcaagatcattgaatc 30934896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 11661747 - 11661795
Alignment:
Q  127 cttattaatttatgtaatcttagctcttagatcattttaaaacaaaata 175  Q
    ||||||||||||| |||| ||| ||||| ||||||||||||||||||||    
T  11661747 cttattaatttatttaattttaactctttgatcattttaaaacaaaata 11661795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 16757522 - 16757456
Alignment:
Q  68 gttaattttaacatcaaatgtctaaggtggaccgacatggtaagtggtctaccatagaccttattaa 134  Q
    ||||| ||||||  |||||||||||| |||||| ||||  ||||||||| | |||||||||||||||    
T  16757522 gttaactttaaccacaaatgtctaagatggaccaacattataagtggtccatcatagaccttattaa 16757456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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