View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8358_high_1 (Length: 349)
Name: NF8358_high_1
Description: NF8358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8358_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 12698011 - 12697680
Alignment:
| Q |
1 |
cttgtaactttcaaagcagtgtcttctattaacatggatgtataattgaactttaatgctattattgagaagggttgaataatatgcatttagttaagta |
100 |
Q |
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| T |
12698011 |
cttgtaactttcaaagtagtgtcttctattaacatggatgtataattgaactttaatgctattattgagaagggatgaataatatatatttagttaagta |
12697912 |
T |
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| Q |
101 |
tcatttgattgatccattatatatacactccttgaattcatttcaggatatgctagtataattcaactttatagtctataaatgtcagtatcctcaacga |
200 |
Q |
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| T |
12697911 |
tcatttgattgatccattatatatacactccttgaattcatttcaggatatgctagtataattcaactttatagtccataaatgtcagcatcctcaacga |
12697812 |
T |
|
| Q |
201 |
agatggtggtggtgcctcatattatgatggtatcctcaaactattgaacgctgcaccatcaaatgtgtttggggagtcatatttgattgttgaagttttg |
300 |
Q |
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| T |
12697811 |
agatggtggtggtgcctcatattatgatggtat-ctcaaactattgaacgctgcaccatcaaatgtgtttggggagtcatatttgattgttgaagttttg |
12697713 |
T |
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| Q |
301 |
gattatgataatcatcaggtgacctagaaaata |
333 |
Q |
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| T |
12697712 |
gattatgataatcatcaggtgacctagaaaata |
12697680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 45077839 - 45077755
Alignment:
| Q |
1 |
cttgtaactttcaaagcagtgtcttctattaacatggatgtataa-ttgaactttaatgctattattgagaagggttgaataata |
84 |
Q |
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| T |
45077839 |
cttgtaacttccaaagtagtgtcttctgataacatggatgtaaaattttaattttaatgctataattgaaaaggaatgaataata |
45077755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 45081914 - 45081862
Alignment:
| Q |
137 |
ttcatttcaggatatgctagtataattcaactttatagtctataaatgtcagt |
189 |
Q |
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||||||||||||| ||| || |||| |||||||||||||| |||||||||||| |
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| T |
45081914 |
ttcatttcaggatttgcaagcataactcaactttatagtccataaatgtcagt |
45081862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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