View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8358_high_3 (Length: 250)
Name: NF8358_high_3
Description: NF8358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8358_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 31727754 - 31727979
Alignment:
| Q |
17 |
caatttgatgatgagttactgattttttgtgtttttggaatgaaccattgggttatttatcagatcacgaagcatttttactcatcaaagggtgagtggg |
116 |
Q |
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| T |
31727754 |
caatttgatgatgagttactgattttttgtgtttttggaatgaaccattgggttatttatcagatcacgaagcatttttactcatcaaaaggtgagtggg |
31727853 |
T |
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| Q |
117 |
agaacttgactagagatctgaaggagatctaatgttgaatggtgcctatttcacaccgtctgaagcgggagcatcttcttcgacatatgccaaagcctca |
216 |
Q |
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|||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31727854 |
agaactggactggagatctgaaggagatctaatattgaatggtgcctatttcacaccgtctggagcgggagcatcttcttcgacatatgccaaagcctca |
31727953 |
T |
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| Q |
217 |
agtatgtcagcacaaccacctatgct |
242 |
Q |
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| T |
31727954 |
agtatgtcagcacgaccacctatgct |
31727979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 36 - 242
Target Start/End: Original strand, 39082941 - 39083148
Alignment:
| Q |
36 |
tgattttttgtgtttttggaatgaaccattgggttatttatcagatcacgaagcatttttactcatcaaagggtgagtgggagaacttgactag-agatc |
134 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | ||||| |
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| T |
39082941 |
tgattttatgtgtttttggaatgaaccattgggttatttatcagatcacgaagcatttttactcatcaaagggtgagtgggagaactggaattggagatc |
39083040 |
T |
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| Q |
135 |
tgaaggagatctaatgttgaatggtgcctatttcacaccgtctgaagcgggagcatcttcttcgacatatgccaaagcctcaagtatgtcagcacaacca |
234 |
Q |
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| T |
39083041 |
tgaaggagatctaatgttgaatggtgcctacttcacaccgtctggagcgggagcatcttcttcgacatatgccaaagcctcaagcatgtcagcacgacca |
39083140 |
T |
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| Q |
235 |
cctatgct |
242 |
Q |
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|||||||| |
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| T |
39083141 |
cctatgct |
39083148 |
T |
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