View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8358_low_4 (Length: 258)

Name: NF8358_low_4
Description: NF8358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8358_low_4
NF8358_low_4
[»] chr2 (1 HSPs)
chr2 (1-249)||(12698166-12698415)
[»] chr4 (1 HSPs)
chr4 (160-245)||(33614644-33614729)
[»] chr7 (2 HSPs)
chr7 (159-245)||(44157464-44157550)
chr7 (1-83)||(35365046-35365130)
[»] chr1 (2 HSPs)
chr1 (196-249)||(47984886-47984939)
chr1 (1-45)||(21968019-21968064)
[»] chr3 (3 HSPs)
chr3 (1-67)||(21301654-21301721)
chr3 (55-104)||(30333857-30333906)
chr3 (1-83)||(5348988-5349072)
[»] chr8 (2 HSPs)
chr8 (1-45)||(5934635-5934680)
chr8 (1-72)||(14031640-14031713)


Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 12698166 - 12698415
Alignment:
Q  1 tttatatgaaattttgatttgattaatattttaagtataaatattatgatctttaaattgtaacaaacctaataaatcatgttcgtcttcttcgatgaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  12698166 tttatatgaaattttgatttgattaatattttaagtataaatattatgatctttaaattgtaacaaacctaataaatcatgtttgtcttcttcgaagaca 12698265  T
Q  101 ccaatgaaatgtatg-nnnnnnnnataactgtaacaatagtaaaaactatcnnnnnnncattaccacatgtaacttggcatgacacgtcaaacatatgac 199  Q
    |||||||||||||||         |||||| ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| |    
T  12698266 ccaatgaaatgtatgtttttttttataactataacaatagtaaaaactatcaaaaaaacattaccacatgtaacttggcatgacacgtcaaacatatggc 12698365  T
Q  200 agtgtcacatagacagtcaaatgacatgtcaagttaactaacagaataat 249  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12698366 agtgtcacgtagacagtcaaatgacatgtcaagttaactaacagaataat 12698415  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 245
Target Start/End: Complemental strand, 33614729 - 33614644
Alignment:
Q  160 ttaccacatgtaacttggcatgacacgtcaaacatatgacagtgtcacatagacagtcaaatgacatgtcaagttaactaacagaa 245  Q
    ||||||| ||| || |||||||||||||||||||  || ||||| |||||||||||||||||| || |||| ||| ||||||||||    
T  33614729 ttaccacctgtgacgtggcatgacacgtcaaacacgtggcagtgccacatagacagtcaaatgccacgtcatgttgactaacagaa 33614644  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 44157550 - 44157464
Alignment:
Q  159 attaccacatgtaacttggcatgacacgtcaaacatatgacagtgtcacatagacagtcaaatgacatgtcaagttaactaacagaa 245  Q
    ||||| |||||| || ||||||||||| ||| |||  |||||||||||| |||||||||||||| ||||| | ||| ||||||||||    
T  44157550 attacaacatgtgacgtggcatgacacatcagacacgtgacagtgtcacgtagacagtcaaatgtcatgttatgttgactaacagaa 44157464  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 35365130 - 35365046
Alignment:
Q  1 tttatatgaaattttgattt-gattaatattttaagtataaatatta-tgatctttaaattgtaacaaacctaataaatcatgtt 83  Q
    |||||||||||||||||||| |||||| ||| |||||| |||||||  |||  |||||||||||||||||| || ||| ||||||    
T  35365130 tttatatgaaattttgattttgattaaaattataagtacaaatatttgtgacttttaaattgtaacaaacccaaaaaaccatgtt 35365046  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 47984939 - 47984886
Alignment:
Q  196 tgacagtgtcacatagacagtcaaatgacatgtcaagttaactaacagaataat 249  Q
    |||||||||||| ||||||||| |||| ||||||| ||| ||||||||||||||    
T  47984939 tgacagtgtcacgtagacagtcgaatgtcatgtcacgttgactaacagaataat 47984886  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21968064 - 21968019
Alignment:
Q  1 tttatatgaaattttgattt-gattaatattttaagtataaatatt 45  Q
    |||||||||||||||||||| |||||| ||| ||||||||||||||    
T  21968064 tttatatgaaattttgattttgattaaaattataagtataaatatt 21968019  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 21301654 - 21301721
Alignment:
Q  1 tttatatgaaattttgattt-gattaatattttaagtataaatattatgatctttaaattgtaacaaa 67  Q
    |||||||||||||||||||| |||||| ||| |||||| ||| ||| |||  ||||||||||||||||    
T  21301654 tttatatgaaattttgattttgattaaaattataagtacaaaaattgtgacttttaaattgtaacaaa 21301721  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 30333857 - 30333906
Alignment:
Q  55 aaattgtaacaaacctaataaatcatgttcgtcttcttcgatgacaccaa 104  Q
    ||||| |||||||||||||||||||||||  |||| ||| ||||||||||    
T  30333857 aaattataacaaacctaataaatcatgtttatctttttcaatgacaccaa 30333906  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 5349072 - 5348988
Alignment:
Q  1 tttatatgaaattttgattt-gattaatattttaagtataaatattat-gatctttaaattgtaacaaacctaataaatcatgtt 83  Q
    |||||||| ||||||||||| |||||| |||||||||||  ||||| | ||  ||||||||||||||| || ||| |||||||||    
T  5349072 tttatatgtaattttgattttgattaaaattttaagtattgatatttttgacttttaaattgtaacaaccccaatgaatcatgtt 5348988  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5934635 - 5934680
Alignment:
Q  1 tttatatgaaattttga-tttgattaatattttaagtataaatatt 45  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||||||    
T  5934635 tttatatgaaattttgattttgattaaaattataagtataaatatt 5934680  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 14031640 - 14031713
Alignment:
Q  1 tttatatgaaattttga-tttgattaatattttaagtataaata-ttatgatctttaaattgtaacaaacctaa 72  Q
    ||||||||||||||||| ||||||||| ||| |||||| ||||| || |||  || ||||||||||||||||||    
T  14031640 tttatatgaaattttgattttgattaaaattataagtacaaatatttgtgaaattaaaattgtaacaaacctaa 14031713  T

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