View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8358_low_6 (Length: 241)
Name: NF8358_low_6
Description: NF8358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8358_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 42902699 - 42902906
Alignment:
| Q |
15 |
cataggaaagcaattcgatgtcatgatcatctagaaagtgtatgaattacctctcgctaccctggtttctcaaacgtttcagcacatcttcttcgccaat |
114 |
Q |
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| T |
42902699 |
cataggaaagcaattcaatgtcatgatcatctagaaagtgtatgaattacctctcgctaccctggtttctcaaacgtttcagcacatcttcttcgccaat |
42902798 |
T |
|
| Q |
115 |
gagtcgtctgaccaaacctttaaattgaccaaaaattcaattcagactgaatcatgatcatagatatagtgatcagtgataatatacaaacacttatgca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42902799 |
gagtcgtctgaccaaacctttaaattgaccaaaaattcaattcagactgaatcatgatcatagatatagtgatcagtgataatatacaaacacttatgga |
42902898 |
T |
|
| Q |
215 |
tgctacat |
222 |
Q |
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|||||||| |
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| T |
42902899 |
tgctacat |
42902906 |
T |
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