View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8359_high_1 (Length: 629)
Name: NF8359_high_1
Description: NF8359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8359_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 214 - 610
Target Start/End: Complemental strand, 43535530 - 43535134
Alignment:
| Q |
214 |
ataattgcattagttagtagtgacactatagcttacatcattttcactacaaaatatcaaacattgtagtcttgtttataatgaacattacattgtagtt |
313 |
Q |
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| T |
43535530 |
ataattacattagttagtagtgacactatagcttacatcattttcactacaaaatatcaaacattgtagtcttgtttataatgaacattacattgtagtt |
43535431 |
T |
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| Q |
314 |
tcattgacttgcattattgatctttttatgaatacccttttgagcataggttatgataccgctaaataaaataatgcattatcaggaggcaactgggcct |
413 |
Q |
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| T |
43535430 |
tcattgacttgcattattgatctttttatgaatacccttttgagcataggttatgataccgctaaataaaataatgcattatcaggaggcaactgggcct |
43535331 |
T |
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| Q |
414 |
cttgcccatgatatagtttatgcttttagcacttccactaccataatatgacaaaaatatatggtgatgtagctttcatttcattacatgcttcacagcc |
513 |
Q |
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| T |
43535330 |
cttgcccatgatatag-ttatgcttttagcacttccactaccataacatgacaaaaatatatggtgatgtagctttcatttcattacatgcttcacagcc |
43535232 |
T |
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| Q |
514 |
aaagtgaacaaagataaaagggtta-nnnnnnnnnnnnnnnnggctaggactattacacgagcatagagacttcaaacattaaaataatgaacctttc |
610 |
Q |
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| T |
43535231 |
aaagtgaacaaatataaaagggttattatttatttattttttggctaggactattacacgagcatagagacttcaaacattaaaataatgaacctttc |
43535134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 43536099 - 43535945
Alignment:
| Q |
1 |
tgaacaatttaatgcgtctgattgatttgaaattttttgttgacacatctccctctactatgtacaattttgtagactactattatttttcttggacatc |
100 |
Q |
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| T |
43536099 |
tgaacaatttaatgcgtctgattgatttgaaattttttgttgacgcatctccctctactatgtgcaattttgtagactactattatttttcttggacatc |
43536000 |
T |
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| Q |
101 |
aattttannnnnnnnnccctatgtgcaatttagattcacatttccgtacttctgtag |
157 |
Q |
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| T |
43535999 |
aatgtt--ttttttttccgtatgtgcaatttagattcacatttccgtacttctgtag |
43535945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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