View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8359_low_2 (Length: 563)
Name: NF8359_low_2
Description: NF8359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8359_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 363
Target Start/End: Original strand, 48043396 - 48043734
Alignment:
| Q |
18 |
gatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttagaatgttttacaaaccgacaaattactg |
117 |
Q |
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| T |
48043396 |
gatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttagaatgttttacaaaccgacaaattactg |
48043495 |
T |
|
| Q |
118 |
agtcaatgttgttggagtttttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcccctgctcatgtgaaacaacatcatatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48043496 |
agtcaatgttgttggagtttttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcccctgctcatgtgaaacaacatcatatg |
48043595 |
T |
|
| Q |
218 |
aatggaaagtacgagcacatcctgnnnnnnngcaaattttttgaaatcaaaggatcacacactacttaaatcttttttgtcaggtcttgcttagacaaat |
317 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48043596 |
aatg--------gagcacatcctgaaaaaaagcaaattttttgaaatcaaaggatcacacactacttaaatcttttttgtcaggtcttgcttagacaaat |
48043687 |
T |
|
| Q |
318 |
ccccaggtttgtcaatcttatt-acctagaaccagcagtggaatccc |
363 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
48043688 |
ccccaggtttgtcaatcttattaacctagaaccagcagtggaatccc |
48043734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 48056614 - 48056836
Alignment:
| Q |
18 |
gatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttagaatgttttacaaaccgacaaattactg |
117 |
Q |
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|||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||| |||| |
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| T |
48056614 |
gatatcagtctgcaatgtaacattcaaatagaatcctagggcagaagttgagagcttcagttctttgcgttagaatgttttacaaaccaacaaataactg |
48056713 |
T |
|
| Q |
118 |
agtcaatgttgttggagtttttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcccctgctcatgtgaaacaacatcatatg |
217 |
Q |
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|||| |||||| |||||||||||| ||||||||||||| |||||||||| ||| |||| ||||||||||||| || | || |||||||||||||| ||| |
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| T |
48056714 |
agtcgatgttggtggagtttttacttgagatcatgatgcaacaaacttctctctcatttattgatttcagtctccagtgcacgtgaaacaacatca-atg |
48056812 |
T |
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| Q |
218 |
aatggaaagtacgagcacatcctg |
241 |
Q |
| |
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|| ||||||||| ||||||||||| |
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| T |
48056813 |
aaaggaaagtacaagcacatcctg |
48056836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 137 - 358
Target Start/End: Original strand, 48051481 - 48051701
Alignment:
| Q |
137 |
tttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcccctgctcatgtgaaacaacatcatatgaatggaaagtacgagcaca |
236 |
Q |
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|||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||| || ||||||| |||| |
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| T |
48051481 |
tttacacgagatcatgatgtaacaaacttccttcccatatattgatttcagtcccctgcacatgtgaaacaacatcatatgaaaggcaagtacggacaca |
48051580 |
T |
|
| Q |
237 |
tcctgnnnnnnngcaaattttttgaaatcaaaggatcacacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatctt |
336 |
Q |
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||||| || || ||| ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48051581 |
tcctgattaaaagctaaaattt-gaaatcataggatcacacactacttaaaccttttctgtcaggtcttgcttagacaaatccccaggtttatcaatctt |
48051679 |
T |
|
| Q |
337 |
attacctagaaccagcagtgga |
358 |
Q |
| |
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|||| |||||||||||||||| |
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| T |
48051680 |
gttacttagaaccagcagtgga |
48051701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 447 - 550
Target Start/End: Original strand, 48043874 - 48043978
Alignment:
| Q |
447 |
aagtcatggagttcacttcttgaagcaggtaaattctcataagcggctgcatcaacatcatacctgctagttccagcac-aaaaaatggatgataattgt |
545 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
48043874 |
aagtcatggagttcacttcttgaagcaggtaaattctcataagcggctgcatcaacatcatacctgctagttccagcacaaaaaaatggatgataattgt |
48043973 |
T |
|
| Q |
546 |
cctct |
550 |
Q |
| |
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||||| |
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|
| T |
48043974 |
cctct |
48043978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 48051338 - 48051480
Alignment:
| Q |
18 |
gatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttagaatgttttacaaaccgacaaattactg |
117 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| || |||| |
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| T |
48051338 |
gatatcagtctgcaatgtaacattcaaattgattcatatggcaagagttgagagcttcaattgtttgctttagaatgtttt------------ataactg |
48051425 |
T |
|
| Q |
118 |
agtcaatgttgttggagtttttacatgagatcatgatgtaacaaacttccctccc |
172 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
48051426 |
agtccatgttgttggagtttttacacgagatcatgatgtaacaaacttccctccc |
48051480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 48037347 - 48037528
Alignment:
| Q |
18 |
gatatcagtctgcaatgtaacattcaaatagattcatatggcagaag-ttgagagcttcagttgtttgctttagaatgttttacaaaccgacaaattact |
116 |
Q |
| |
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||||||||||||||||| |||||||||||||||||| | |||||||| |||||||||| |||| |||||||||||||| |||||||| | || ||| ||| |
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| T |
48037347 |
gatatcagtctgcaatgcaacattcaaatagattcacagggcagaagtttgagagcttaagttctttgctttagaatgctttacaaatcaactaataact |
48037446 |
T |
|
| Q |
117 |
gagtc----aatgttgttggagtttttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcccctg |
194 |
Q |
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||||| ||||||| || ||||||||||||||||||||| | |||||||||| || ||||||| |||| |||||||||| |
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| T |
48037447 |
gagtcaattaatgttggtgaagtttttacatgagatcatgaagcaacaaacttctctttcattgatggattccagtcccctg |
48037528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 274 - 351
Target Start/End: Original strand, 48056891 - 48056968
Alignment:
| Q |
274 |
acacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccag |
351 |
Q |
| |
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||||| |||||| ||||||| |||| |||||||||||||||| | ||||||||||||||||||||||| |||||||| |
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| T |
48056891 |
acacagtacttacatcttttctgtcgtgtcttgcttagacaaagcaccaggtttgtcaatcttattaccaagaaccag |
48056968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 48045205 - 48045331
Alignment:
| Q |
18 |
gatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttag---aatgttttacaaaccgacaaatta |
114 |
Q |
| |
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||||||| ||||||||| |||||||||||||||||||| ||||| ||||||| |||| |||||||||| ||||||||||||| | || || | |
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| T |
48045205 |
gatatcaatctgcaatgcaacattcaaatagattcatagggcaggagttgag------agttctttgctttagaaaaatgttttacaaagcaacgcataa |
48045298 |
T |
|
| Q |
115 |
ctgagtcaatgttgttggagtttttacatgaga |
147 |
Q |
| |
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||||| |||||||| || ||||||||||||||| |
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| T |
48045299 |
ctgagccaatgttggtgtagtttttacatgaga |
48045331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 295 - 362
Target Start/End: Original strand, 48045485 - 48045552
Alignment:
| Q |
295 |
tgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccagcagtggaatcc |
362 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||||| |||||||||| |||||||| | |||||| |
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| T |
48045485 |
tgtcgggtcttgcttagacaaattgtcaggtttgtcaattttattacctaaaaccagcaattgaatcc |
48045552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 445
Target Start/End: Original strand, 48043794 - 48043832
Alignment:
| Q |
407 |
ggaattgaatctgagatcacccttatcactccattcttt |
445 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| |
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| T |
48043794 |
ggaatcgaatctgagatcacccttatcactccattcttt |
48043832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 452 - 544
Target Start/End: Original strand, 48057003 - 48057095
Alignment:
| Q |
452 |
atggagttcacttcttgaagcaggtaaattctcataagcggctgcatcaacatcatacctgctagttccagcacaaaaaatggatgataattg |
544 |
Q |
| |
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|||||||||| ||||||| |||||| |||||||||| | ||||||||||| | || || |||||| ||| ||||| ||||||||||||| |
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| T |
48057003 |
atggagttcatttcttgagacaggtagattctcataatcacctgcatcaacaacgtaacttagagttccggcaaaaaaagtggatgataattg |
48057095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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