View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8359_low_4 (Length: 483)
Name: NF8359_low_4
Description: NF8359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8359_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 20 - 473
Target Start/End: Complemental strand, 46129559 - 46129100
Alignment:
| Q |
20 |
ttgtgcagcagggtcgtccgacagtaagtcctttttcattgcaagaacggtttgtgcctgttaaacaacattaagagtaaacaacattaaggttcatccg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46129559 |
ttgtgcagcagggtcgtccgacagtaagtcctttttcattgcaagaacggtttgtgcctgttaaacaacattaagagtaaacaacattaaggttcatccg |
46129460 |
T |
|
| Q |
120 |
acttgctaaagaacattaagggtcgtccgacatgcattatatgtagctctagctctaacatggaccnnnnnnn-caacagaattctgttaaagcctctta |
218 |
Q |
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| T |
46129459 |
acatgctaaagaacattaagggtcgtccgacatgcattatatgtagctctagctctaacatggaccttttttttcaacagaattctgttaaagcctctta |
46129360 |
T |
|
| Q |
219 |
tattggcaattggtaccgctccttaatcatggctatgctcttgatatggaacaa----ctatcatagttaccctaaattctaaaacatgaaagtattaat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46129359 |
tattggcaattggtaccgctccttaatcatggctatgctcttgatatggaacaattatatatcatagttaccctaaattctaaaacatgaaagtattaat |
46129260 |
T |
|
| Q |
315 |
tacaattttgaattttccaacaatacaacaaatttttggtatcttaacatcatagaataattagttcttctactctatccttctaaca-ttaagtgtcaa |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
46129259 |
tacaattttgaattttccaacaatacaacaaatttttggtatcttaacatcatggaataattagttcttctactctatccttctaacatttaagtgtcaa |
46129160 |
T |
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| Q |
414 |
gtttagcatatttcgttagagtcatattattaaccattttcaattactaatggagtatta |
473 |
Q |
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| T |
46129159 |
gtttagcatatttcgttagagtcatattattaaccattttcaattactaatggagtatta |
46129100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 126 - 480
Target Start/End: Complemental strand, 46702267 - 46701912
Alignment:
| Q |
126 |
taaagaacattaagggtcgtccgacatgcattatatgtagctctagctctaacatggaccnnnnnnn-------caacagaattctgttaaagcctctta |
218 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||| ||||||||| |||||||||||| |
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| T |
46702267 |
taaacaacattaagggtcgtccgacatgcattatatgtagctctaactctaaaatggactttttttttctctctcaatagaattctgataaagcctctta |
46702168 |
T |
|
| Q |
219 |
tattggcaattggtaccgctccttaatcatggctatgctcttgatatggaacaactatcatagttaccctaaattctaaaacatgaaagtattaattaca |
318 |
Q |
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| T |
46702167 |
tattggcaattggtatcgctccttaatcatggctatgctcttgatatggaacaattatcatagttaccctaaattctaaaacatgaaagtattaattaca |
46702068 |
T |
|
| Q |
319 |
attttgaattttccaacaatacaacaaatttttggtatcttaacat--catagaataattagttcttctactctatccttctaacattaagtgtcaagtt |
416 |
Q |
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| T |
46702067 |
atttt-------ccaacaatacaacaaatttttggtatcttaacatatcatagaataattagttcttctaatctatccttctaacattaagtgtcaagtt |
46701975 |
T |
|
| Q |
417 |
tagcatatttcgttagagtcatattattaaccattttcaattactaatggagtattatctaccc |
480 |
Q |
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| T |
46701974 |
tggcatatttcgttagagtcatattattaaccattttc-attactaatggagtattatttaccc |
46701912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 46702344 - 46702243
Alignment:
| Q |
20 |
ttgtgcagcagggtcgtccgacagtaagtcctttttcattgcaagaacggtttgtgcctgttaaacaacattaagagtaaacaacattaaggttcatccg |
119 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||| ||| |||||| |||||||||||| |||||||||||||||||||||||| || |||| |
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| T |
46702344 |
ttgtgcagcagggtcgtccgacagtaagccctgtttcattgcaggaatggtttgcgcctgttaaacaccattaagagtaaacaacattaagggtcgtccg |
46702245 |
T |
|
| Q |
120 |
ac |
121 |
Q |
| |
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|| |
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| T |
46702244 |
ac |
46702243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 473
Target Start/End: Complemental strand, 46123256 - 46123110
Alignment:
| Q |
326 |
attttccaacaatacaacaaatttttggtatcttaacat--catagaataattagttcttctactctatccttctaacattaagtgtcaagtttagcata |
423 |
Q |
| |
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||||||||| |||||| ||| |||||||||||||||||| |||||| || ||||||||| ||||| ||| ||| |||| | | |||||||||| ||| |
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| T |
46123256 |
attttccaataataca-caagtttttggtatcttaacatatcatagactagttagttcttttactccctccatct--catttaatttcaagtttagaata |
46123160 |
T |
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| Q |
424 |
tttcgttagagtcatattattaaccattttcaattactaatggagtatta |
473 |
Q |
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|||||| | |||||||||| ||||||| |||||||||||||| |||| |
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| T |
46123159 |
attcgtttgtgtcatattatctgccattttaaattactaatggagcatta |
46123110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 46123532 - 46123452
Alignment:
| Q |
20 |
ttgtgcagcagggtcgtccgacagtaagtcctttttcattgcaagaacggtttgtgcctgttaaacaacattaagagtaaa |
100 |
Q |
| |
|
||||||||||||||||| |||| |||| || | |||||||| ||| ||||| ||||||||||||||||||||||||| |
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| T |
46123532 |
ttgtgcagcagggtcgttagacaataaggccagtgtcattgcaggaatggttttcacctgttaaacaacattaagagtaaa |
46123452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 46123395 - 46123358
Alignment:
| Q |
148 |
gacatgcattatatgtagctctagctctaacatggacc |
185 |
Q |
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|||||||||||||||||||||||| ||||| ||||||| |
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| T |
46123395 |
gacatgcattatatgtagctctaggtctaaaatggacc |
46123358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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