View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8359_low_8 (Length: 254)
Name: NF8359_low_8
Description: NF8359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8359_low_8 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 8111942 - 8112185
Alignment:
| Q |
12 |
gagatgaagaaacgtagagaaatatttaagaaggaattggaacatgttaaggagtttaacaaaggta-ttttttaatccatccagtttgttttagattca |
110 |
Q |
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| T |
8111942 |
gagatgaagaaacgtcgagaactattcaagaagaaattggaacatgttaaggagtttaacaaaggtaatttttttatctatctagtttgtttaagtttca |
8112041 |
T |
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| Q |
111 |
attcaataatcgatcagattatcagttgttagtagtattttaaatatctttctctttctctgtaatgaatttcacaggtaaccacagttacacaattggc |
210 |
Q |
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| T |
8112042 |
attcaataatcgatgagattatcgattgttagtagtattttaaatatctttctctttctctgtaatgaattccacaggtaatcacagttacacaattggc |
8112141 |
T |
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| Q |
211 |
ataaatcaattttctgatcgaactgaagaagagttgtctgtatc |
254 |
Q |
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| T |
8112142 |
ataaatcaattttctgatcgaactgaagaagagttgtctgtatc |
8112185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 8107297 - 8107540
Alignment:
| Q |
12 |
gagatgaagaaacgtagagaaatatttaagaaggaattggaacatgttaaggagtttaacaaaggta-ttttttaatccatccagtttgttttagattca |
110 |
Q |
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| T |
8107297 |
gagatgaagaaacgtcgagaactattcaagaagaaattggaacatgttaaggagtttaacaaaggtaatttttttatctatctagtttgtttaagtttca |
8107396 |
T |
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| Q |
111 |
attcaataatcgatcagattatcagttgttagtagtattttaaatatctttctctttctctgtaatgaatttcacaggtaaccacagttacacaattggc |
210 |
Q |
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| T |
8107397 |
attcaataatcgatgagattatcgattgttagtagtattttaaatatctttctctttctctgtaatgaattccacaggtaatcacagttacacaattggc |
8107496 |
T |
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| Q |
211 |
ataaatcaattttctgatcgaactgaagaagagttgtctgtatc |
254 |
Q |
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| T |
8107497 |
ataaatcaattttctgattgaactgaagaagagttgtctgtatc |
8107540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 66 - 254
Target Start/End: Original strand, 8093698 - 8093880
Alignment:
| Q |
66 |
tttaacaaaggtattttttaatccatccagtttgttttagattcaattcaataatcgatcagattatcagttgttagtagtattttaaatatctttctct |
165 |
Q |
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| T |
8093698 |
tttaacaaaggtatttttttatccatccggttt---tcagtttcaattcaataatcaatgagatga---gttgtatgtagtattttaagtatctttatct |
8093791 |
T |
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| Q |
166 |
ttctctgtaatgaatttcacaggtaaccacagttacacaattggcataaatcaattttctgatcgaactgaagaagagttgtctgtatc |
254 |
Q |
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| T |
8093792 |
ttcattgtaatgaatttcgcaggtaatcacagttacataattggcataaattaattttctgatttaactaaagaagagtcatctgtatc |
8093880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 30879230 - 30879172
Alignment:
| Q |
14 |
gatgaagaaacgtagagaaatatttaagaaggaattggaacatgttaaggagtttaaca |
72 |
Q |
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| T |
30879230 |
gatgaagaaatgtagagaaatactcaagaagaaattggaacatcttgagaagtttaaca |
30879172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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