View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8359_low_9 (Length: 235)
Name: NF8359_low_9
Description: NF8359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8359_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 40879344 - 40879122
Alignment:
| Q |
1 |
cataactacttgtacctaactgcgcaaagtcagttagaaggataggttaatttttattagtataaataccaatcctagtgtatgcaagaaagaattattc |
100 |
Q |
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| T |
40879344 |
cataactacttgtacctaactgcgcaaagtcagttagaaggataggttaattgttattagtataaataccaatcctagtgtatgcaagaaataattattc |
40879245 |
T |
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| Q |
101 |
aaatcatttacactctttccctcactttctcagtagtttacgttttctattaatgataaccacttaattttaaacattgttcaatcgaacttgtaaattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| ||||||||||||||||| |
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| T |
40879244 |
aaatcatttacactctttccctcactttctcagtagtttacgttttctattaatgataaccaattgattttaaacatagttccatcgaacttgtaaattg |
40879145 |
T |
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| Q |
201 |
ttgattagacttgctgaagttgg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
40879144 |
ttgattagacttgctgaagttgg |
40879122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 9624446 - 9624499
Alignment:
| Q |
170 |
ttaaacattgttcaatcgaacttgtaaattgttgattagacttgctgaagttgg |
223 |
Q |
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| T |
9624446 |
ttaaacatagttccatcgaacttgtaaatagttgattagacttgctgaagttgg |
9624499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 9620039 - 9620093
Alignment:
| Q |
167 |
attttaaacattgttcaatcgaacttgtaaattgttgattagacttgctgaagtt |
221 |
Q |
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| T |
9620039 |
attttaaacgtagtttcatcgaacttgtaaattgttgattagacttgctgaagtt |
9620093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 40254085 - 40254032
Alignment:
| Q |
168 |
ttttaaacattgttcaatcgaacttgtaaattgttgattagacttgctgaagtt |
221 |
Q |
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|||||||||| |||| ||| |||||||||||| ||||||||||||| ||||||| |
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| T |
40254085 |
ttttaaacatagttcgatcaaacttgtaaattattgattagacttgttgaagtt |
40254032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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