View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8360_low_10 (Length: 234)
Name: NF8360_low_10
Description: NF8360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8360_low_10 |
 | |
|
| [»] scaffold0122 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 44408063 - 44407849
Alignment:
| Q |
1 |
atccagagagcaagcttagcaaggaaccacgtgaggaggcaaaaaatcttgaacattgatgcatgaaaatatttatgttaataagtggtnnnnnnnnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44408063 |
atccagagagcaagcttagcaaggaaccacgtgaggaggcaaaaactcttgaacattgatgcattaaaatatttatgttaataagtggtaaaaaaataaa |
44407964 |
T |
|
| Q |
101 |
nnnnnnnnnntataataagtgaagagagttttaccaaagttagagaagattgaggagtaaaaatattgatgttgaagagtagagtgtatagagaaaatgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44407963 |
aacacaaaaatataataagtgaagagagttttaccaaagttagagaagatagaggagtaaaaatattaatgttgaagagtagagtgtatagagaaaatgg |
44407864 |
T |
|
| Q |
201 |
aggagtataattttt |
215 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
44407863 |
aggagtagaattttt |
44407849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 53917858 - 53918073
Alignment:
| Q |
1 |
atccagagagcaagcttagcaaggaaccacgtgaggaggcaaaaaatcttgaacattgatgcatgaaaatatttatgttaataagtggt-nnnnnnnnnn |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
53917858 |
atccagagagcaagcttagcaaggaaccacgtgaggaggcaaaaaatcttgaacattgatgcatgaaaatatttatgttagtaagtggtaaaaaaaatca |
53917957 |
T |
|
| Q |
100 |
nnnnnnnnnnntataataagtgaagagagttttaccaaagttagagaagattgaggagtaaaaatattgatgttgaagagtagagtgtatagagaaaatg |
199 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
53917958 |
aaacacaaaaatataataagtgaagagggttttaccaaacttagagaagataaaggagtaaaaatattgatgttgaagagtagagtgtattgagaaaatg |
53918057 |
T |
|
| Q |
200 |
gaggagtataattttt |
215 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
53918058 |
gaggagtagaattttt |
53918073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 20360356 - 20360442
Alignment:
| Q |
1 |
atccagagagcaagcttagcaaggaacca-cgtgaggaggcaaaaaatcttgaacattgatgcatgaaaatatttatgttaataagt |
86 |
Q |
| |
|
||||| |||||||| ||||||||||| || | ||| ||||||| || |||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
20360356 |
atccatagagcaagtttagcaaggaatcaacacgagaaggcaaagaaacttgaacacggatacatgaaaatatttatgttaataagt |
20360442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0122 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 46403 - 46452
Alignment:
| Q |
5 |
agagagcaagcttagcaaggaaccacgtgaggaggcaaaaaatcttgaaca |
55 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
46403 |
agagagcaagcttagcaaggaaccataggaggaggcaaaaaa-cttgaaca |
46452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 19540856 - 19540909
Alignment:
| Q |
1 |
atccagagagcaagcttagcaaggaaccacgtgaggaggcaaaaaatcttgaaca |
55 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
19540856 |
atccagagagcaaacttagcaaggaaccataggaggaggcaaaaaa-cttgaaca |
19540909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University