View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8360_low_2 (Length: 584)
Name: NF8360_low_2
Description: NF8360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8360_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 478; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 567
Target Start/End: Original strand, 42212574 - 42213158
Alignment:
| Q |
1 |
gttattagctcggtaagttcatctaattatgcagatttactgagtattgatcatcaatttgtgaattttttgttttggtagaatcataagacgaattcta |
100 |
Q |
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| T |
42212574 |
gttattagctcggtaagttcatctaattatgcagatctactgagtattgatcatcaatttgtgaattttttgttttggtagaatcatacgacgaattcta |
42212673 |
T |
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| Q |
101 |
tttatcggtacctagttttaagtacaaaaagcatcacatataa-----------------tcaataaatatgtgtgaataaatagatagtaaaaaccata |
183 |
Q |
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| T |
42212674 |
tttattggtacctagttttaagtacaaaaagcatcacatataagataggatatgacataatcaataaatatgtgtgaataaatagatagtaaaaaccata |
42212773 |
T |
|
| Q |
184 |
ggtgaatttgtaacatgatgttaattgttatccatttcacactgcaattcacgtgtaatttgcttgtttgatgaacatttcacagatttatttgcacttt |
283 |
Q |
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| T |
42212774 |
ggtgaatttgtaacatgatgttaattgttatccatttcacactgcaattcatgtgtaatttgcttgtttgatgaacatttcacagatttatttgcacttt |
42212873 |
T |
|
| Q |
284 |
tagattgattaatttttcccctagctgtgctatcttaatccaacttatcctatactttacagtttgttccaca-nnnnnnnnnaattattattgttcaat |
382 |
Q |
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| T |
42212874 |
tagattgattaatttttcccctagctgtgctatcttaatccaacttatcctatactttacagtttgttccacattttttttttaattattattgttcaat |
42212973 |
T |
|
| Q |
383 |
tatgaagatatcatcctgttctacaatttgacttcctcatcggtcatcatggacttagctgagttttattttcccttgttaacattttgggtccaatagt |
482 |
Q |
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| T |
42212974 |
tatgaagatatcatcctgttctacaatttgacttcctcatcggtcatcatggacttagctgagttttattttcccttgttaacattttgggtccaatagt |
42213073 |
T |
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| Q |
483 |
atattttgttctttgttaaagtttatttatacttatatgagtgataatattaatatgtttcttatttttcattaattattgttct |
567 |
Q |
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| T |
42213074 |
atattttgttctttgttaaagtttatttatacttatatgagtgataatattaatatgtttcttatttttcattaattattgttct |
42213158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 149 - 353
Target Start/End: Original strand, 42205553 - 42205753
Alignment:
| Q |
149 |
aaatatgtgtgaataaatagatagtaaaaacca---taggtgaatttgtaacatgatgttaattgttatccatttcacactgcaattcacgtgtaatttg |
245 |
Q |
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| T |
42205553 |
aaatatgtgtgaataaatagataataaaaccttaattaggtgaatttgtaacacgatgata-------tccatttcacactg-aattcatgtgtaatttg |
42205644 |
T |
|
| Q |
246 |
cttgtttgatgaacatttcacagatttatttgcacttttagattgattaatttttcccct--agctgtgctatcttaatccaacttatcctatactttac |
343 |
Q |
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| T |
42205645 |
cttgtttgatgaacatttcacagatttatttgcactttt-gattgattattttttctagttgtgatatgatatcttaatccaacctatcctatacttcac |
42205743 |
T |
|
| Q |
344 |
agtttgttcc |
353 |
Q |
| |
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|||| ||||| |
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| T |
42205744 |
agttagttcc |
42205753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 42205387 - 42205525
Alignment:
| Q |
1 |
gttattagctcggtaagttcatctaattatgcagatttactgagtattgatcatcaatttgtgaatt-ttttgttttg-gtagaatcataagacgaattc |
98 |
Q |
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|||||||||||||| || |||||| || ||| || ||||||| |||||||||||||||||||||| |||||||||| || ||| ||||| ||||| |
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| T |
42205387 |
gttattagctcggtgagctcatct---tacgcaaatctactgagaattgatcatcaatttgtgaattattttgttttgcctaagatcttaagaggaattt |
42205483 |
T |
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| Q |
99 |
tatttatcggtacctagttttaagtacaaaaagcatcacatataa |
143 |
Q |
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| T |
42205484 |
tattt---ggtaccaagttttaagtacaaaaagtatcacatataa |
42205525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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