View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8360_low_3 (Length: 441)
Name: NF8360_low_3
Description: NF8360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8360_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 328
Target Start/End: Original strand, 35013425 - 35013735
Alignment:
| Q |
18 |
caaatcagataggagccccctactatctcaaaaccagcgactcaaagcaaattgaattacatccataacaaactgaaccaaaccacatgagcaaggataa |
117 |
Q |
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| T |
35013425 |
caaatcagataggagccccctactatctcaaaaccagcgactcaaagcaaattgaattacatccataacaaactgaaccaaaccacatgagcaaggataa |
35013524 |
T |
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| Q |
118 |
caacaacaaggagtgcaccatcacaataaatatgagtttcgcacttaggtatgatcaccttgctcactgtacacactctttctaccttctagcacatcgc |
217 |
Q |
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| T |
35013525 |
caacaacaaggagtgcaccatcactataaatatgagtttcgcacttaggtatgatcaccttgctcactgtacacactctttctaccttctagcacatcgc |
35013624 |
T |
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| Q |
218 |
tttactttggcagcataatgtcttttgcaggcaccccctgtttggagaaagatcatacgaccatttgcgacatatatcaaacccccaacgtaagtactac |
317 |
Q |
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| T |
35013625 |
tttactttggcaacataatgtcttttgcaggcaccccctgttcggagaaagatcatacgaccatttgcgacatatatcaaacccccaacgtaagtactac |
35013724 |
T |
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| Q |
318 |
aacccccaatt |
328 |
Q |
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| T |
35013725 |
aacccccaatt |
35013735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 381 - 434
Target Start/End: Original strand, 35014379 - 35014432
Alignment:
| Q |
381 |
cttggtagaatatatccataggcctcaagattccacacgatgtcaagaataata |
434 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||| |||| |
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| T |
35014379 |
cttggtagaatatattcttaggcctcaagattccacacgatgtcaagaacaata |
35014432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 379
Target Start/End: Original strand, 35013728 - 35013768
Alignment:
| Q |
339 |
ccccaattgttcatacaagaacgttgctccccactgtgggg |
379 |
Q |
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| T |
35013728 |
ccccaattgttcatacaagaacgttgctccccactgcgggg |
35013768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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