View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8360_low_7 (Length: 307)
Name: NF8360_low_7
Description: NF8360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8360_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 26 - 269
Target Start/End: Complemental strand, 775324 - 775089
Alignment:
| Q |
26 |
gagttcataatagtaggaagaaggacgacaatagatagagtcaagataggtactgtaaaaatgacttgtattattgtatataatcaaactgacttttgta |
125 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
775324 |
gagttcataatagtaggaagagggacgacaatagatagagtcgagataggtactgtaaaaatgacttgtattattgtatataatcaaactgacttttgta |
775225 |
T |
|
| Q |
126 |
actttaatgtttgtatctttgaccactaaatacttttatacatgcatccaaactttattagtctcattttagttaacttaaatatgatctgtctaatgtc |
225 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
775224 |
actttaatgtttgtatctttgaccactagatacttttatacatgcatccaaac-ttattagtctcattttagttaacttaaatatggtc-------tgtc |
775133 |
T |
|
| Q |
226 |
ttgatacatttcattgacaaactagtagaatattaatatcatta |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
775132 |
ttgatacatttcattgacaaactagtagaatattaatatcatta |
775089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 17461157 - 17461214
Alignment:
| Q |
224 |
tcttgatacatttcattgacaaactagtagaatattaatatcattacaacaatagcat |
281 |
Q |
| |
|
|||| |||||| || ||||||||||||| ||||| |||||||||||| |||| ||||| |
|
|
| T |
17461157 |
tcttaatacatgtctttgacaaactagttgaatactaatatcattacgacaacagcat |
17461214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 17455745 - 17455697
Alignment:
| Q |
105 |
ataatcaaactgacttttgtaactttaatgtttgtatctttgaccacta |
153 |
Q |
| |
|
|||| |||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
17455745 |
ataaacaaactgactaaggtaactttaatgtctgtatctttgaccacta |
17455697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University