View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8360_low_8 (Length: 284)
Name: NF8360_low_8
Description: NF8360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8360_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 775093 - 774871
Alignment:
| Q |
1 |
cattaatggtaaaatagtagcaaagaaaacatattgattaattattgatgttatccctccctgagagtccataaaatcatatctgctactatttcaatag |
100 |
Q |
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| T |
775093 |
cattaatggtaaaatagtagcaaagaaaacatattgattaattattgatgttacccctccctgagagtccataaaatcatatctgctactatttcaatag |
774994 |
T |
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| Q |
101 |
aatttctgatgagggttaaaacatcaaattagtttatgcacttcacttttctttcacattgttgacttcaatgttttacagggaactctcaacaaaagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
774993 |
aatttctgatgagggttaaaacatcaaattagtttatgcacttcacttttctttcacattgttgacttcaatgttttacagggaactctcaagaaaagct |
774894 |
T |
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| Q |
201 |
aagaaagcaaacaatgtatggtg |
223 |
Q |
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| T |
774893 |
aagaaagcaaacaatgtatggtg |
774871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 161; Significance: 7e-86; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 17461212 - 17461468
Alignment:
| Q |
1 |
cattaatggtaaaatagtagcaaagaaaacatattgattaattattgatgttatccctccctgagagtccataaaatcatatctgctactatttcaatag |
100 |
Q |
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|||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||||| |||||||||||||| |||||| ||||||||||||| ||| |
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| T |
17461212 |
cattaatggtaaaatagtagcaaataaagcatactgattaattatagatgttatccctttctgagagtccataa--tcatatatgctactatttcagtag |
17461309 |
T |
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| Q |
101 |
aatttctgatgagggttaaaacatcaaattagtttatgcacttcacttttctttcacattgttgacttcaatgttttacagggaactctcaacaaaagct |
200 |
Q |
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| T |
17461310 |
aatttctgatgagggttaaaacatcaaatt-------------cacttttctttcacattgttgatttcaaccttttacagggaactctcaaaaaaagct |
17461396 |
T |
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| Q |
201 |
aagaaagcaaacaatgtatggtgacgcttaagtgggttgcttggggatcaaaatcgcttgctgatgtccatc |
272 |
Q |
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| T |
17461397 |
aagaaagcaaacaatgtatggtggcgcttaagtgggttgcttggggatcaaaatcgcttgctgatgtacatc |
17461468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 130 - 272
Target Start/End: Complemental strand, 17455698 - 17455556
Alignment:
| Q |
130 |
tagtttatgcacttcacttttctttcacattgttgacttcaatgttttacagggaactctcaacaaaagctaagaaagcaaacaatgtatggtgacgctt |
229 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||| |
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| T |
17455698 |
tagtttatgcacttcacttttctttcacattttcgacttcaatgttttacagggaactctcaagaaaagctaagaaagcaaacaatgtatggtggcactt |
17455599 |
T |
|
| Q |
230 |
aagtgggttgcttggggatcaaaatcgcttgctgatgtccatc |
272 |
Q |
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| T |
17455598 |
aagtgggttgcttggggatcaaaatcgcttgctgatgtacatc |
17455556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 17804903 - 17804823
Alignment:
| Q |
180 |
agggaactctcaacaaaagctaagaaagcaaacaatgtatggtgacgcttaagtgggttgcttggggatcaaaatcgcttg |
260 |
Q |
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|||||||| || | ||||||| |||||||||| || | ||||| ||||||||||| ||||| ||||| ||||| |||||| |
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| T |
17804903 |
agggaactgtctaaaaaagctcagaaagcaaataacatgtggtggcgcttaagtggcttgctcggggaccaaaaccgcttg |
17804823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 160 - 267
Target Start/End: Original strand, 52142789 - 52142896
Alignment:
| Q |
160 |
tgttgacttcaatgttttacagggaactctcaacaaaagctaagaaagcaaacaatgtatggtgacgcttaagtgggttgcttggggatcaaaatcgctt |
259 |
Q |
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||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||| ||||||| ||| |||||||| | ||||||||||||||||| | |
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| T |
52142789 |
tgttgacttcaatctttcacagggaactctcaaaaaaagctaagaaagcaaacaatatatggtggcgcctaagtgggctatttggggatcaaaatcgcat |
52142888 |
T |
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| Q |
260 |
gctgatgt |
267 |
Q |
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||| |||| |
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| T |
52142889 |
gctaatgt |
52142896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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