View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8361_high_1 (Length: 541)
Name: NF8361_high_1
Description: NF8361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8361_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 11 - 525
Target Start/End: Complemental strand, 51385953 - 51385401
Alignment:
| Q |
11 |
cagagaggaccctgtggaggaggcacatctataccaacaaaacctccatagcacacacttgaacacccttcttcaactcttagtacatactgatgaaatt |
110 |
Q |
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| T |
51385953 |
cagagaggaccctgtggaggaggcacatctataccaacaaaacctccatagcacacacttgaacacccttcttcaactcttagtacatactgatgaaatt |
51385854 |
T |
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| Q |
111 |
aaaaccacaatactgaatgtctctactttgttgttaaacattgttattgaaaattcgaa--------------------ggtaaaattgtacctgttctg |
190 |
Q |
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| T |
51385853 |
aaaaccacaatacttaatgtctctactttgttgttaaacattgttattgaaaattcgaatgaaataaatgaaacttcaaggtaaaattgtacctgttctg |
51385754 |
T |
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| Q |
191 |
gagatagaggaaatgatctatttccaatcttgaatataatttgtggcatagttggaatattatcacagtttataaatgattgtcccactggattgggtag |
290 |
Q |
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| T |
51385753 |
gagatagaggaaatgatctatttccaatcttgaatataatttgtggcatagttggaatattatcacagtttataaatgattgtcccactggattgggtag |
51385654 |
T |
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| Q |
291 |
cttctcacataactttgaaaagaaatacaaaattggttaagttctttcttactttggatataaaggataagtttgagatgtaat---------------- |
374 |
Q |
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| T |
51385653 |
cttctcacataactttgaaaagaaatacaaaattggttaagttctttcttactttggatataaaggataagtttgagatgtaatctaatatgcaataatt |
51385554 |
T |
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| Q |
375 |
--ctacctcatcaacgtattttattattctttctcttgtatttctctgcttaagctgaacttgaatccaaaacacaatcatgtcgcataaagtacacaag |
472 |
Q |
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| T |
51385553 |
aactacctcatcaacgtattttattattctttctcttgtatttctctgcttaagctgaacttgaatccaaaacacaatcatgtcgcataaagtacacaag |
51385454 |
T |
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| Q |
473 |
gggttctccctactttgtgtctcatcccaactttcatcgtctaccactgtttc |
525 |
Q |
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| T |
51385453 |
gggttctccctactttgtgtctcatcccaactttcatcgtctaccactgtttc |
51385401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 269
Target Start/End: Complemental strand, 40675012 - 40674913
Alignment:
| Q |
168 |
aaggtaaaattgtacctgttctggagatagaggaaatgatctatttccaatcttgaatataatttgtggcatagttggaatattatcacagtttataaat |
267 |
Q |
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| T |
40675012 |
aaggtaaaattggacctgatctagatatagaggaaatgatgtct--ccaatcctaaatataacttgtggcatagttgtcatactaccacaatttataaat |
40674915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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