View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8361_high_2 (Length: 533)
Name: NF8361_high_2
Description: NF8361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8361_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 158 - 525
Target Start/End: Original strand, 42055693 - 42056060
Alignment:
| Q |
158 |
aatctaatgttagagtttgtgctgatgcagatgatgacacagaagtggatgattctccaatagagcaggtcagactaacagtgtcaacaacagacgatcc |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42055693 |
aatctaatgttagagtttgtgctgatgcagatgatgacacagaagtggatgattctccaatagagcaggtcagactaacagtgtcaacaacagacgaccc |
42055792 |
T |
|
| Q |
258 |
aacacaaccagcactgacatttaggacatggattattggtttggcatgttgcattgtccttgcctttgtgaaccaattctttgggtacagaaccaaccct |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42055793 |
aacacaaccagcactgacatttaggacatggattattggtttggcatgttgcattgtccttgcctttgtgaaccaattctttgggtacagaaccaaccct |
42055892 |
T |
|
| Q |
358 |
ctgactatcactgctgtctcagcacagattgtttctctcccagttggaaaactaatggctgcaacacttccaaccaccatatataaagttcccttcacta |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
42055893 |
ctgactatcactgctgtctcagcacagattgtttctctcccaattggaaaactaatggctgcaacacttccaacaacaatatataaagttcccttcacta |
42055992 |
T |
|
| Q |
458 |
aatggtctttcacattgaatcctggaccattcaatttgaaggaacatgccctcattaccatctctgct |
525 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42055993 |
aatggtctttcacattgaatcctggaccattcaatttgaaggaacatgccctcattaccatctttgct |
42056060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 158 - 520
Target Start/End: Original strand, 42080843 - 42081205
Alignment:
| Q |
158 |
aatctaatgttagagtttgtgctgatgcagatgatgacacagaagtggatgattctccaatagagcaggtcagactaacagtgtcaacaacagacgatcc |
257 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42080843 |
aatctaatgttagagtttgtgttgatgcagatgatgacacagaagtggatgattctccaatagagcaggtcagactaacagtgtcaacaacagacgaccc |
42080942 |
T |
|
| Q |
258 |
aacacaaccagcactgacatttaggacatggattattggtttggcatgttgcattgtccttgcctttgtgaaccaattctttgggtacagaaccaaccct |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42080943 |
aacacaaccagcactgacatttaggacatggattattggtttggcatgttgcattgtccttgcctttgtgaaccaattctttgggtacagaaccaaccct |
42081042 |
T |
|
| Q |
358 |
ctgactatcactgctgtctcagcacagattgtttctctcccagttggaaaactaatggctgcaacacttccaaccaccatatataaagttcccttcacta |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
42081043 |
ctgactatcactgctgtctcagcacagattgtttctctcccaattggaaaactaatggctgcaacacttccaacaacaatatataaagttcccttcacta |
42081142 |
T |
|
| Q |
458 |
aatggtctttcacattgaatcctggaccattcaatttgaaggaacatgccctcattaccatct |
520 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42081143 |
aatggtctttcacattgaatcctggaccattcaatttgaaggaacatgccctcattaccatct |
42081205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 180 - 525
Target Start/End: Original strand, 42071917 - 42072262
Alignment:
| Q |
180 |
tgatgcagatgatgacacagaagtggatgattctccaatagagcaggtcagactaacagtgtcaacaacagacgatccaacacaaccagcactgacattt |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||| || |||||||||||||| |||||| |
|
|
| T |
42071917 |
tgatgcagatgatgacacagaagtggatgattctcctatagagcaagtcagactaacagtgtcaataacagacgaccctacacaaccagcactaacattt |
42072016 |
T |
|
| Q |
280 |
aggacatggattattggtttggcatgttgcattgtccttgcctttgtgaaccaattctttgggtacagaaccaaccctctgactatcactgctgtctcag |
379 |
Q |
| |
|
||||||||| |||||||||| | | |||||||| ||||||||||||||||||||||||||| | |||||||||||||||| |||| ||| ||||||||| |
|
|
| T |
42072017 |
aggacatgggttattggttttgtgtcttgcattgcccttgcctttgtgaaccaattctttggattcagaaccaaccctctgtctattacttctgtctcag |
42072116 |
T |
|
| Q |
380 |
cacagattgtttctctcccagttggaaaactaatggctgcaacacttccaaccaccatatataaagttcccttcactaaatggtctttcacattgaatcc |
479 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42072117 |
cacagattattgctctcccagttggaaaactaatggctgcaacacttccaacaacaatatataaagttcccttcactaaatggtctttcacattgaatcc |
42072216 |
T |
|
| Q |
480 |
tggaccattcaatttgaaggaacatgccctcattaccatctctgct |
525 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42072217 |
tggaccattcaatttgaaggaacatgccctcattaccatctttgct |
42072262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 314 - 428
Target Start/End: Complemental strand, 36537594 - 36537480
Alignment:
| Q |
314 |
tccttgcctttgtgaaccaattctttgggtacagaaccaaccctctgactatcactgctgtctcagcacagattgtttctctcccagttggaaaactaat |
413 |
Q |
| |
|
||||||| ||| |||||||||| || || |||| |||||||||| ||| |||||| |||||||||| |||||| || | |||||| |||| ||||| || |
|
|
| T |
36537594 |
tccttgcatttatgaaccaatttttaggatacaaaaccaaccctttgaaaatcacttctgtctcagctcagattattaccctcccacttgggaaacttat |
36537495 |
T |
|
| Q |
414 |
ggctgcaacacttcc |
428 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
36537494 |
ggctgcaacacttcc |
36537480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 314 - 428
Target Start/End: Complemental strand, 36531982 - 36531868
Alignment:
| Q |
314 |
tccttgcctttgtgaaccaattctttgggtacagaaccaaccctctgactatcactgctgtctcagcacagattgtttctctcccagttggaaaactaat |
413 |
Q |
| |
|
||||||| ||||||||||| || || || ||||||||||||||| ||| |||||| ||||||| || |||||| || | || ||| |||| ||||| || |
|
|
| T |
36531982 |
tccttgcatttgtgaaccagtttttaggctacagaaccaaccctttgaaaatcacttctgtctcggctcagattattgccctgccacttgggaaacttat |
36531883 |
T |
|
| Q |
414 |
ggctgcaacacttcc |
428 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
36531882 |
ggctgcaacacttcc |
36531868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 314 - 428
Target Start/End: Complemental strand, 36525149 - 36525035
Alignment:
| Q |
314 |
tccttgcctttgtgaaccaattctttgggtacagaaccaaccctctgactatcactgctgtctcagcacagattgtttctctcccagttggaaaactaat |
413 |
Q |
| |
|
||||||| ||||||||||| ||||| || ||||||||||||||| ||| |||||| |||| ||||| ||||| | | |||||| |||||| || || |
|
|
| T |
36525149 |
tccttgcatttgtgaaccagttcttaggctacagaaccaaccctttgagaatcacttctgtttcagctcagatcatcacactcccacttggaaggcttat |
36525050 |
T |
|
| Q |
414 |
ggctgcaacacttcc |
428 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
36525049 |
ggctgcaacacttcc |
36525035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University