View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8361_low_14 (Length: 244)

Name: NF8361_low_14
Description: NF8361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8361_low_14
NF8361_low_14
[»] chr6 (2 HSPs)
chr6 (111-230)||(24225883-24226002)
chr6 (23-118)||(24225224-24225319)


Alignment Details
Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 111 - 230
Target Start/End: Original strand, 24225883 - 24226002
Alignment:
111 aatagcaccatcaactgccgccttctcaacttctttgataggaaaatacctcctaattccaactttgttgacggagtagcttctcatgatgtcattgtga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||     
24225883 aatagcaccatcaactgccgccttctcaacttctttgataggaaaatacctcctaattccaactttgttgaaggagtatcttctcatgatgtcattgtgg 24225982  T
211 acccccacacacaatctctg 230  Q
    ||||||||| ||||||||||    
24225983 acccccacagacaatctctg 24226002  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 24225224 - 24225319
Alignment:
23 ggccttaaccaacaaacccctccttccatggttagttcgcttatttacgtctatcctctcttccgtcatctccgcctctcgccgctccaatagcac 118  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||    
24225224 ggccttaaccaacaaacccctccttccatgtttagttcgcttatttacgtctatcatctctttcgtcatatccgcctctcgccgctccaatagcac 24225319  T

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