View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8361_low_4 (Length: 504)
Name: NF8361_low_4
Description: NF8361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8361_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 210 - 413
Target Start/End: Complemental strand, 5922116 - 5921913
Alignment:
| Q |
210 |
tctctcttaatatggtatcagtttcttctcctccaatgggggagtttgttacgatccataaccattttttctaacaacttccgctgcaattttccctctc |
309 |
Q |
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| T |
5922116 |
tctctcttgatatggtatcagtttcttctccttcaatgagggagtttgttacgatccataaccgttttttctaacaacttccgctgcaattttccctctc |
5922017 |
T |
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| Q |
310 |
tccttcatcttcttcactgaatcttcatgattctgtgcttgattcttcatttttgtgcttgattgcttcgtcttcaagcttcgttctctgtgtatttgtt |
409 |
Q |
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| T |
5922016 |
tccttcatcttcttcactgaatcttcatgattatgtgcttgattcttcatttttgtgcctgattgcttcgtcttcaagcttcgttctctatgtatttgtt |
5921917 |
T |
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| Q |
410 |
gctt |
413 |
Q |
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|||| |
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| T |
5921916 |
gctt |
5921913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 5922490 - 5922332
Alignment:
| Q |
8 |
gtactagtctgttgatctattgctaatcatggaatgggttgctatgatcttccacctgaatcttttcagagtttgataggcttggttgtagcacaaactt |
107 |
Q |
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| T |
5922490 |
gtactagtctgttgatctcttgctaatcatggaatgggttgctatgatcttccacctgaatcttttcagagtttgatagccttggttgtagcacaaactt |
5922391 |
T |
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| Q |
108 |
cttttgttgatacttgatgaaagtattaccttataattatattcaaatttcaaataaac |
166 |
Q |
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| T |
5922390 |
cttttgttgatatttgatgaaagtattaccttgtaattatattcaaatttcaaataaac |
5922332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 6e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 194 - 414
Target Start/End: Complemental strand, 20326387 - 20326168
Alignment:
| Q |
194 |
tttcattcatattctttctctcttaatatggtatcagtttcttctcctccaatgggggagtttgttacgatccataaccattttttctaacaacttccgc |
293 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||| || |||||||||| |||||||||| | ||||||||| |||||||| |
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| T |
20326387 |
tttcattcatattctttctct--taatatggtatcagtttcttctccttcaattggagagtttgttaagatccataacaaccttttctaactacttccgc |
20326290 |
T |
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| Q |
294 |
tgcaattttccctctctccttcatcttcttcactgaatcttcatgattctgtgcttgattct-tcatttttgtgcttgattgcttcgtcttcaagcttcg |
392 |
Q |
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||||||||| ||| | ||| |||||||||||| |||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| | |
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| T |
20326289 |
tgcaatttttcctttttccatcatcttcttcattgaatcttcatgattctgtgattgattctcttttttttgtgcttgattgcttcgtcttcaagctttg |
20326190 |
T |
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| Q |
393 |
ttctctgtgtatttgttgcttc |
414 |
Q |
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|| |||| | |||||||||||| |
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| T |
20326189 |
ttttctgagaatttgttgcttc |
20326168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 36164964 - 36164903
Alignment:
| Q |
189 |
acacttttcattcatattctttctctcttaatatggtatcagtttcttctcctccaatgggg |
250 |
Q |
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| T |
36164964 |
acacttttcattcatattctttctctcttaatatggtatcagtttcttctccttcaaggggg |
36164903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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