View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8361_low_5 (Length: 348)
Name: NF8361_low_5
Description: NF8361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8361_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 63 - 330
Target Start/End: Complemental strand, 22770667 - 22770396
Alignment:
| Q |
63 |
tatgaaacccattttattttagtaaagttacaatacagtacctattacggcattcttcaaatgacgatcatttctcttaggaatcggaggtttcagtact |
162 |
Q |
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| T |
22770667 |
tatgaaacccattttattttagtaaagttacaatacagtacctattacggcattcttcaaatgacgatcatttctcttaggaatcggaggtttcagtact |
22770568 |
T |
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| Q |
163 |
acatagcaaaaa----ttgtgagagaacaatgagtgtacattgtctgaaacataaaaccatacaatctcctaccacaaatgaatgagcgtcggtaaaata |
258 |
Q |
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| T |
22770567 |
acatagcagaaagaaattgtaagagaacaatgagtgtacattgtctgaaacataaaaccatacaatctcgtaccacaaatgaatgagtgtcggtaaaata |
22770468 |
T |
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| Q |
259 |
taatgtgtttacctgggccacaagtgaaatttaaagtttcctggtttagtagacatgactttccttcaagat |
330 |
Q |
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| T |
22770467 |
taatgtgtttacctgggccacaagtgaaatttaaagtttcctggtttagtagacatgactttccttcaagat |
22770396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 22770879 - 22770822
Alignment:
| Q |
12 |
atggacatcaaatatatgtgtttgttgaaattaaatttgtaatagcatttttatgaaa |
69 |
Q |
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| T |
22770879 |
atggacatcaaatatatgtttttcttgaaattaaacttgtaatagcattttcatgaaa |
22770822 |
T |
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