View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8361_low_9 (Length: 285)
Name: NF8361_low_9
Description: NF8361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8361_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 15606801 - 15606536
Alignment:
| Q |
1 |
ctcattggcttgaggtcgaaaacacactagcacactcattttgatgagtaacaacaatgtaaaacnnnnnnnnnngtttgagacaactaatttgacaatt |
100 |
Q |
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| T |
15606801 |
ctcattggcttgaggtcaaaaacacactagcacactcattttgatgagtaacaacaatgcaaaacttttttctt-gtttgagacaactaatttgacaatt |
15606703 |
T |
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| Q |
101 |
ggcaatatggcaataacagtcttcactcttaggtcaatttttgacctaaacgccattaattcagtgtgtggatgtgagagaaagagagcagatttgagaa |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15606702 |
ggcaatatggcaacaacagtcttcactcttaggtcaatttttgacctaaacgccattaattcagtgtgtggatgtgagagaaagagagcagatttgagaa |
15606603 |
T |
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| Q |
201 |
acataccatatgcagacatcttcttgagctcctgacatgttgactcacattcaattgtttaatcaaa |
267 |
Q |
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| T |
15606602 |
acataccatatgcagacatcttcttgagctcctgacatgttgactcacattcacttgtttaatcaaa |
15606536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 15615156 - 15614891
Alignment:
| Q |
1 |
ctcattggcttgaggtcgaaaacacactagcacactcattttgatgagtaacaacaatgtaaaacnnnnnnnnnngtttgagacaactaatttgacaatt |
100 |
Q |
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| T |
15615156 |
ctcattggcttgaggtcaaaaacacactagcacactcattttgatgagtaacaacaatgcaaaacttttttcgt-gtttgagacaactaatttgacaatt |
15615058 |
T |
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| Q |
101 |
ggcaatatggcaataacagtcttcactcttaggtcaatttttgacctaaacgccattaattcagtgtgtggatgtgagagaaagagagcagatttgagaa |
200 |
Q |
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| T |
15615057 |
ggcaatatggcaacaacagtcttcactcttaggtcaatttttgacctaaacgccaataattcagtgtgtggatgtgagagaaagagagcagatttgagaa |
15614958 |
T |
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| Q |
201 |
acataccatatgcagacatcttcttgagctcctgacatgttgactcacattcaattgtttaatcaaa |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
15614957 |
acataccatatgcagacatcttcttgagctcctgacatgttgacccacattcacttgtttaatcaaa |
15614891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 108 - 209
Target Start/End: Complemental strand, 15625390 - 15625289
Alignment:
| Q |
108 |
tggcaataacagtcttcactcttaggtcaatttttgacctaaacgccattaattcagtgtgtggatgtgagagaaagagagcagatttgagaaacatacc |
207 |
Q |
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| T |
15625390 |
tggcaataacagtcttcattcttaggtcaatttttgacctaaatgccattaattcagtgtgtggatgtgagaaaaagagagcagatttgagaaacatacc |
15625291 |
T |
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| Q |
208 |
at |
209 |
Q |
| |
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|| |
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| T |
15625290 |
at |
15625289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 15638333 - 15638243
Alignment:
| Q |
178 |
gagaaagagagcagatttgagaaacataccatatgcagacatcttcttgagctcctgacatgttgactcacattcaattgtttaatcaaag |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || ||||||||||| |
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| T |
15638333 |
gagaaagagagcagatttgagaaacataccatatgcagacatctacttgagctcctgacatgtttactcacattcacttttttaatcaaag |
15638243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 15625747 - 15625683
Alignment:
| Q |
1 |
ctcattggcttgaggtcgaaaacacactagcacactcattttgatgagtaacaacaatgtaaaac |
65 |
Q |
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| T |
15625747 |
ctcattggcttgaggtcgaaaacacactagcacactcattttgatgagtaacaacaatgtaaaac |
15625683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 15649507 - 15649443
Alignment:
| Q |
1 |
ctcattggcttgaggtcgaaaacacactagcacactcattttgatgagtaacaacaatgtaaaac |
65 |
Q |
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| T |
15649507 |
ctcattggcttgaggtcgaaaacacactagcacactcattttgatgagtaacaacaatgtaaaac |
15649443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 15649123 - 15649072
Alignment:
| Q |
158 |
aattcagtgtgtggatgtgagagaaagagagcagatttgagaaacataccat |
209 |
Q |
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| T |
15649123 |
aattcagtgtgtggatgtgagaaaaagagagcagatttgagaaacataccat |
15649072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 15625125 - 15625066
Alignment:
| Q |
209 |
tatgcagacatcttcttgagctcctgacatgttgactcacattcaattgtttaatcaaag |
268 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||| || ||||||||||| |
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| T |
15625125 |
tatggagacatcttcttgagctcctgacatgttgactcacagtcacttttttaatcaaag |
15625066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 15648919 - 15648860
Alignment:
| Q |
209 |
tatgcagacatcttcttgagctcctgacatgttgactcacattcaattgtttaatcaaag |
268 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||| || ||||||||||| |
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| T |
15648919 |
tatggagacatcttcttgagctcctgacatgttgactcacagtcacttttttaatcaaag |
15648860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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