View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8362_high_10 (Length: 250)
Name: NF8362_high_10
Description: NF8362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8362_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 54034119 - 54034365
Alignment:
| Q |
1 |
ccttcatgcattaactgcttctttttctgactttaggaaataagccaaaaccataccgatcgaacttgctctacaaaacttgtacagtaaggcacatgga |
100 |
Q |
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| T |
54034119 |
ccttcatgcattagctgcttctttttctgactttaggaaataagccaaaaccataccgatcgaacttgctctacaaaacttgtacagtaaggcacatgga |
54034218 |
T |
|
| Q |
101 |
tcggttaacccattctagactaattacatgcggaaggctttgttacaagtgtgcaccattttgaaccctaatccaccttacaacctaggcctacacattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54034219 |
tcggttaacccattctagactaattacatgcggaaggctttgtcataagtctgcaccattttgaaccctaatccaccttacaacctaggcctacacattt |
54034318 |
T |
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| Q |
201 |
ttgtttaaaaaatttctcacaaaagtagaaataggaccaccaaactc |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
54034319 |
ttgtttaaaaaatttctcacaaaagtagaaataggaccatcaaactc |
54034365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 31780484 - 31780598
Alignment:
| Q |
19 |
ttctttttctgactttaggaaataagccaaaaccataccgatcgaacttgctctacaaaacttgtacagtaaggcacatggatcggttaacccattctag |
118 |
Q |
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||||||||||||| |||| | ||||| ||||||||||| ||| ||| ||||||||||||||||||| |||||||||||||||||| | | ||||||| |
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| T |
31780484 |
ttctttttctgacattagcatataagtcaaaaccatactgat---actggctctacaaaacttgtacaataaggcacatggatcggtcagcatattctag |
31780580 |
T |
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| Q |
119 |
actaattacatgcggaag |
136 |
Q |
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| T |
31780581 |
actaatttcatgtggaag |
31780598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 2243738 - 2243819
Alignment:
| Q |
20 |
tctttttctgactttaggaaataagccaaaaccataccgatcgaacttgctctacaaaacttgtacagtaaggcacatggatcggt |
105 |
Q |
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||||||||||||||||||| | ||| ||||||||||| ||| ||||||||| ||||| ||||||| |||||||||||||||||| |
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| T |
2243738 |
tctttttctgactttaggatacaagtcaaaaccatactgat---acttgctctgcaaaa-ttgtacaataaggcacatggatcggt |
2243819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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