View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8362_high_11 (Length: 240)
Name: NF8362_high_11
Description: NF8362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8362_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 54034099 - 54033877
Alignment:
| Q |
1 |
tttgcgtgatatggctaccagggaggtttgaaatcaggagttggcggaggctttgcagttcataatgtgagggagtttttctatgaaattggcatcatat |
100 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54034099 |
tttgcgtgatatggctactagagaggtttgaaatcaggagttggcggaggctttgcagttcataatgtgagggagtttttctatgaaattggcatcatat |
54034000 |
T |
|
| Q |
101 |
tgtcctatccttatgaaggaactctgagcatccccttcaagtaggcgagataaaagacttgagaacatcttcttgttgagccagtcaacaattgttgtgt |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54033999 |
tgtcccatccttatgaaggaactctgagcatccccttcaagtaggcgagataaaagacttgagaacatcttcttgttgagccagtcaacaattgttgtgt |
54033900 |
T |
|
| Q |
201 |
ctcttatcacctaagggtatcca |
223 |
Q |
| |
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|||||||||||||||||| |||| |
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| T |
54033899 |
ctcttatcacctaagggtgtcca |
54033877 |
T |
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