View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8362_high_4 (Length: 331)
Name: NF8362_high_4
Description: NF8362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8362_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 24263053 - 24263358
Alignment:
| Q |
18 |
agacatttcatctgcattatcttcaatacactttattacatcatttgaacacaaaaacgtgaccggttttagagaataccacgatggaagaccaaggggt |
117 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24263053 |
agacatttcatctgcattatcttcaacacactttattacatcatttgaacacaaaaacgtgactggttttagagaataccacgatggaagaccaaggggt |
24263152 |
T |
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| Q |
118 |
cctctttggagaggaaagaaactcattggtaaagaagctctttatgtgatttctgggttgaaaaggtttaaagatgacgaagaaaagcttattaagttca |
217 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24263153 |
cctctttggagaggaaagaagctcattggtaaagaagctctttatgtgatttctgggttgaaaaggtttaaagatgacgaagaaaagcttcctaagttca |
24263252 |
T |
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| Q |
218 |
tcaaaactcatgttttaaggttattgaagatggatttgattgctgttctcactgaacttgagcgacaacaggaagtttctctcgctctcaaggtttcttc |
317 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24263253 |
tcacaactcatgttttaaggttattgaagatggatttgattgctgttctcactgaacttgagcgacaacaggaagtttctctcgctctcaaggtttcttt |
24263352 |
T |
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| Q |
318 |
tcactc |
323 |
Q |
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|||||| |
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| T |
24263353 |
tcactc |
24263358 |
T |
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