View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8362_high_7 (Length: 257)

Name: NF8362_high_7
Description: NF8362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8362_high_7
NF8362_high_7
[»] chr8 (4 HSPs)
chr8 (24-250)||(14004103-14004329)
chr8 (24-250)||(5766475-5766701)
chr8 (109-210)||(17635611-17635712)
chr8 (109-210)||(17642890-17642991)
[»] chr4 (4 HSPs)
chr4 (65-169)||(1481684-1481785)
chr4 (112-236)||(8186317-8186441)
chr4 (121-213)||(661855-661947)
chr4 (113-213)||(55907634-55907734)
[»] chr6 (4 HSPs)
chr6 (109-192)||(7132323-7132406)
chr6 (109-192)||(7135246-7135329)
chr6 (109-192)||(7138169-7138252)
chr6 (109-213)||(8913375-8913479)
[»] chr2 (1 HSPs)
chr2 (113-213)||(1036570-1036670)
[»] chr1 (1 HSPs)
chr1 (128-212)||(7555196-7555280)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 24 - 250
Target Start/End: Complemental strand, 14004329 - 14004103
Alignment:
Q  24 caccaaactcacctccctcgacctctcgtactattatggtgacctcgatgcacttcttactcaaatctctagcttcccaatgttcaaactcacatcgctc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004329 caccaaactcacctccctcgacctctcgtactattatggtgacctcgatgcacttcttactcaaatctctagcttcccaatgttcaaactcacatcgctc 14004230  T
Q  124 aatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaaccttaattctc 223  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14004229 aatctttccaaccaacccatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaaccttaattctc 14004130  T
Q  224 ttaatagcactgatgtccatctcattg 250  Q
    |||||||||||||| ||||||||||||    
T  14004129 ttaatagcactgatctccatctcattg 14004103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 5766475 - 5766701
Alignment:
Q  24 caccaaactcacctccctcgacctctcgtactattatggtgacctcgatgcacttcttactcaaatctctagcttcccaatgttcaaactcacatcgctc 123  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5766475 caccaaactcacctccctcgacctctcgtactattacggtgacctagatgcacttcttactcaaatctctagcttcccaatgttgaaactcacatcgctc 5766574  T
Q  124 aatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaaccttaattctc 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  5766575 aatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaaccttatttctc 5766674  T
Q  224 ttaatagcactgatgtccatctcattg 250  Q
    |||||||||||||| |||| |||||||    
T  5766675 ttaatagcactgatatccacctcattg 5766701  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 210
Target Start/End: Original strand, 17635611 - 17635712
Alignment:
Q  109 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgtt 208  Q
    ||||||| ||| |||||||| ||||||||||||| | ||||  ||||||| || ||||||||||| ||||| ||||||||||||||||| || | |||||    
T  17635611 aaactcatatcactcaatctgtccaaccaactcaccattccaactaatgggttacgagctttctcccggaatattacaactttgacctctctcacttgtt 17635710  T
Q  209 cc 210  Q
    ||    
T  17635711 cc 17635712  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 210
Target Start/End: Original strand, 17642890 - 17642991
Alignment:
Q  109 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgtt 208  Q
    ||||||||||| |||||||| |||||||| |||| | ||||  | ||||| || | ||||||||| | ||| ||||||||||||||||| || | |||||    
T  17642890 aaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctctctcacttgtt 17642989  T
Q  209 cc 210  Q
    ||    
T  17642990 cc 17642991  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 1481785 - 1481684
Alignment:
Q  65 acctcgatgcacttcttactcaaatctctagcttcccaatgttcaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcg 164  Q
    |||||||||| ||||| || ||||||||  | |||||| ||   |||||||||||||||||| | || |||||||||| |||||| |||||||| |||||    
T  1481785 acctcgatgcgcttctcacccaaatctcctgtttcccattg---aaactcacatcgctcaatatctcaaaccaactcaaccttcccgctaatggcttgcg 1481689  T
Q  165 agctt 169  Q
    |||||    
T  1481688 agctt 1481684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 8186317 - 8186441
Alignment:
Q  112 ctcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttcca 211  Q
    |||||||| |||||||| || ||| ||| || | ||||||| ||||| ||||||| | |||| || || |||||||||||||||||||| |  |||||||    
T  8186317 ctcacatcactcaatctctctaacaaacccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgacctcactcacatgttcca 8186416  T
Q  212 accttaattctcttaatagcactga 236  Q
    || || | ||| | |||||||||||    
T  8186417 acattgaatctatcaatagcactga 8186441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 661947 - 661855
Alignment:
Q  121 ctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaac 213  Q
    |||||||| |||||||||  || | |||| ||||||||||||||||||||||| |   | ||||||||||| ||||| || ||||||| ||||    
T  661947 ctcaatctctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctctctcatttgttacaac 661855  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 55907634 - 55907734
Alignment:
Q  113 tcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaa 212  Q
    |||| ||||||||||| ||||||||||  ||| | || |||| ||| || ||||||||||| |  || |||||||||||||  || || |||||||||||    
T  55907634 tcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgaattctctcatttgttccaa 55907733  T
Q  213 c 213  Q
    |    
T  55907734 c 55907734  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 7132406 - 7132323
Alignment:
Q  109 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttg 192  Q
    |||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||||||||| |  |||||||||||||||    
T  7132406 aaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg 7132323  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 7135329 - 7135246
Alignment:
Q  109 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttg 192  Q
    |||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||||||||| |  |||||||||||||||    
T  7135329 aaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg 7135246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 7138252 - 7138169
Alignment:
Q  109 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttg 192  Q
    |||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||||||||| |  |||||||||||||||    
T  7138252 aaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg 7138169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 213
Target Start/End: Original strand, 8913375 - 8913479
Alignment:
Q  109 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgtt 208  Q
    |||||||||||||||||| | |||||||||   | | ||||||||||||| |||| || ||| |||   || ||||||||||||||||| || | |||||    
T  8913375 aaactcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctctcaattgtt 8913474  T
Q  209 ccaac 213  Q
    |||||    
T  8913475 ccaac 8913479  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 1036570 - 1036670
Alignment:
Q  113 tcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaa 212  Q
    |||| ||||||||||| ||||||||||  ||| | || |||| ||| || ||||||||||| |  || |||||||||||||| || || |||||||||||    
T  1036570 tcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaa 1036669  T
Q  213 c 213  Q
    |    
T  1036670 c 1036670  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 7555280 - 7555196
Alignment:
Q  128 tttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaa 212  Q
    |||||||||||| || | | ||||| | ||| |||||||||||||| |  || ||||||||||| |||||||| | |||||||||    
T  7555280 tttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 7555196  T

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