View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8362_low_1 (Length: 870)

Name: NF8362_low_1
Description: NF8362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8362_low_1
NF8362_low_1
[»] chr8 (5 HSPs)
chr8 (1-863)||(14003254-14004115)
chr8 (2-863)||(5766690-5767553)
chr8 (528-573)||(17627610-17627655)
chr8 (7-47)||(18314728-18314768)
chr8 (7-44)||(17643025-17643062)
[»] chr4 (9 HSPs)
chr4 (101-222)||(1481511-1481632)
chr4 (422-553)||(641449-641580)
chr4 (103-218)||(8186539-8186654)
chr4 (529-607)||(547382-547460)
chr4 (527-625)||(55908278-55908376)
chr4 (404-464)||(1601013-1601073)
chr4 (107-169)||(532630-532692)
chr4 (96-150)||(7225324-7225378)
chr4 (425-550)||(3438101-3438226)
[»] chr1 (2 HSPs)
chr1 (533-607)||(19468064-19468138)
chr1 (101-146)||(19467627-19467672)
[»] chr5 (1 HSPs)
chr5 (407-634)||(38266985-38267213)
[»] scaffold0262 (1 HSPs)
scaffold0262 (533-603)||(390-460)
[»] chr2 (1 HSPs)
chr2 (527-625)||(1037214-1037312)


Alignment Details
Target: chr8 (Bit Score: 819; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 819; E-Value: 0
Query Start/End: Original strand, 1 - 863
Target Start/End: Complemental strand, 14004115 - 14003254
Alignment:
Q  1 ctccatctcattgctgattgttttcctttgctagaagaactcgacctcgcttacccctctaaaatcattaatcacacacgtgctaccttctccactggac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14004115 ctccatctcattgctgattgttttcctttgctagaagaactcgacctcgcttacccctctaaaatcattaatcacacacatgctaccttctccactggac 14004016  T
Q  101 tagaggctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacggcactttgctttctcacttgttcaagaactg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004015 tagaggctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacggcactttgctttctcacttgttcaagaactg 14003916  T
Q  201 caagtttctccaagaggtcatcttgcttagatgtgaacaattaaccgtcgcaggcattgatcttgctctccgccagaaaccaacattgacttctttatcc 300  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  14003915 caagtttctccaagatgtcatcttgcttagatgtgaacaattaaccgtcgcaggcgttgatcttgctctccgccagagaccaacattgacttctttatcc 14003816  T
Q  301 attacaggtactgttactactggtttggaacatcttacctcacatttcatcgactccttgttgagtttgaagggatttgacttctcttcttttgacggga 400  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14003815 attacaggtactgttactactggtttggaatatcttacctcacatttcatcgactccttgttgagtttgaagggatt-gacttctcttcttttgacggga 14003717  T
Q  401 tttcgtatctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaa 500  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003716 tttcatatctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaa 14003617  T
Q  501 tctcatttttgttatctaagtcgaaacgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttct 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14003616 tctcatttttgttatctaagtcgaaacgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgctgctgagttgtctttgtttct 14003517  T
Q  601 tggtgatctgctctctatcaaccttggtaattgtcgcttgcgcagagtttccactttctttgctctcattaccaactgtccttcacttaccgagatcaat 700  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003516 tggtgatctgctctctatcaaccttggtaattgtcgcttgctcacagtttccactttctttgctctcattaccaactgtccttcacttaccgagatcaat 14003417  T
Q  701 atgaatcgcacaaatatccagggaaccaccatacctaattctctgatggatcgtcttgtaaaccctcaattcaagtctctctttctggctagcacttgtt 800  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003416 atgaatcgcacaaatatccagggaaccaccatacctaattctctgatggatcgtcttgtaaaccctcaattcaagtctctctttctggctagcacttgtt 14003317  T
Q  801 tacaagatcaaaatatcatcatgtttgctgcccttttccccaatctgcagcagcttcatctca 863  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003316 tacaagatcaaaatatcatcatgtttgctgcccttttccccaatctgcagcagcttcatctca 14003254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 779; E-Value: 0
Query Start/End: Original strand, 2 - 863
Target Start/End: Original strand, 5766690 - 5767553
Alignment:
Q  2 tccatctcattgctgattgttttcctttgctagaagaactcgacctcgcttacccctctaaaatcattaatcacacacgtgctaccttctccactggact 101  Q
    |||| ||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5766690 tccacctcattgctgatacttttcctttgctagaagaacttgacctcgcttacccctctaaaatcattaatcacacacatgctaccttctccactggact 5766789  T
Q  102 agaggctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacggcactttgctttctcacttgttcaagaactgc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5766790 agaggctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacggcactttgctttctcacttgttcaagaactgc 5766889  T
Q  202 aagtttctccaagaggtcatcttgcttagatgtgaacaattaaccgtcgcaggcattgatcttgctctccgccagaaaccaacattgacttctttatcca 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  5766890 aagtttctccaagaggtcatcttgcttagatgtgaacaattaaccatcgcaggcgttgatcttgctctcctccagaaaccaacattgacttctttatcca 5766989  T
Q  302 ttacaggtactgttactactggtttggaacatcttacctcacatttcatcgactccttgttgagtttgaagggatttgacttctcttcttttgacgggat 401  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5766990 ttacatgtactgttactactggtttggaacatcttacctcacatttcatcgactccttgttgagtttgaagggatt-gacttctcttcttttgacgggat 5767088  T
Q  402 ttcgtatctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaat 501  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5767089 ttcgtatctcagatcaatttctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaat 5767188  T
Q  502 ctcatttttgttatctaagtcgaaacgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttctt 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5767189 ctcatttttgttatctaagtcgaaacgtatccaacatttggatcttcaatatactgattttttgaatgatcattgtgttgctgagttgtctttgtttctt 5767288  T
Q  602 ggtgatctgctctctatcaaccttggtaattgtcgcttgcgcagagtttccactttctttgctctcattaccaactgtccttcacttaccgagatcaata 701  Q
    ||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5767289 ggtgatctgctctctctcaaccttggtaattgtcgcttgctcacagtttccactttctttgctctcattaccaactgtccttcacttaccgagatcaata 5767388  T
Q  702 tgaatcgcacaaatatccagggaaccaccatacctaattctctgatggatcgtcttgtaaaccctcaattcaagtctctctttctggctag---cacttg 798  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | ||||    
T  5767389 tgaatcgcacaaatatccagggaaccaccatacctaattctctgatggatcgtcttgtaaaccctcaattcaagtctctctttctggctagcgccgcttg 5767488  T
Q  799 tttacaagatcaaaatatcatcatgtttgctgcccttttccccaatctgcagcagcttcatctca 863  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5767489 tttagaagatcaaaatatcatcatgtttgctgcccttttccccaatctgcagcagcttcatctca 5767553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 528 - 573
Target Start/End: Original strand, 17627610 - 17627655
Alignment:
Q  528 gtatccaacatttggatcttcaatatgctgattttttgaatgatca 573  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||||    
T  17627610 gtatccaacatttggatcttcagtatgcttattttttgaataatca 17627655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 18314728 - 18314768
Alignment:
Q  7 ctcattgctgattgttttcctttgctagaagaactcgacct 47  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  18314728 ctcattgctgattgtttccctttgctcgaagaactcgacct 18314768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 17643025 - 17643062
Alignment:
Q  7 ctcattgctgattgttttcctttgctagaagaactcga 44  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  17643025 ctcatcgctgattgtttccctttgctagaagaactcga 17643062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 4e-31; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 101 - 222
Target Start/End: Complemental strand, 1481632 - 1481511
Alignment:
Q  101 tagaggctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacggcactttgctttctcacttgttcaagaactg 200  Q
    |||||||||||||||| |||||| |||||||||||||| ||||||||||| |||||  |||| |||||| || |||||||| ||| ||||||||||||||    
T  1481632 tagaggctctttcattggcactcttcaaactccgcaagcttaatctctctgatcattactacgtcaacgacattttgctttttcaattgttcaagaactg 1481533  T
Q  201 caagtttctccaagaggtcatc 222  Q
    |||||||||| || ||||||||    
T  1481532 caagtttctcgaaaaggtcatc 1481511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 422 - 553
Target Start/End: Complemental strand, 641580 - 641449
Alignment:
Q  422 ctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatctcatttttgttatctaagt 521  Q
    |||||||| ||||||||| || | |||||||||| ||| ||||| ||| || ||||| |||| |||||||||  ||||||||  | ||||||||| |||     
T  641580 ctctcctctattgcaatgaaaggccttcctttgacgagacttgtcctctgcaattgcaccggctatacttatgatggaatcttgtgtttgttatccaaga 641481  T
Q  522 cgaaacgtatccaacatttggatcttcaatat 553  Q
      ||| || | |||||| ||||||||||||||    
T  641480 gtaaatgtttacaacatctggatcttcaatat 641449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 8186539 - 8186654
Alignment:
Q  103 gaggctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacggcactttgctttctcacttgttcaagaactgca 202  Q
    |||||||||||||| |||||  ||||||| |||||||||||||| ||| |||||  |||  |||||| ||  ||||||| ||||||||| ||||| || |    
T  8186539 gaggctctttcattggcacttttcaaacttcgcaaggttaatctatctaatcataactatatcaacgacaaattgctttttcacttgttaaagaattgta 8186638  T
Q  203 agtttctccaagaggt 218  Q
    ||  |||| |||||||    
T  8186639 agcatctcgaagaggt 8186654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 529 - 607
Target Start/End: Complemental strand, 547460 - 547382
Alignment:
Q  529 tatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgat 607  Q
    |||||||||||| ||||||||| |||||| |||||||| | ||||   ||||  ||| |||||||||||||||||||||    
T  547460 tatccaacatttagatcttcaaaatgctgtttttttgactaatcaacatgttcttgacttgtctttgtttcttggtgat 547382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 527 - 625
Target Start/End: Original strand, 55908278 - 55908376
Alignment:
Q  527 cgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatctgctctctatcaacctt 625  Q
    ||||| |||||||||||||||||| ||||    ||| ||||||||||   ||| || |||||||||||||||||||||||| || | ||||| ||||||    
T  55908278 cgtatacaacatttggatcttcaaaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaacctt 55908376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 404 - 464
Target Start/End: Complemental strand, 1601073 - 1601013
Alignment:
Q  404 cgtatctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttg 464  Q
    |||||||| ||||| || |||||||| ||||||| ||||| || |||||||||||||||||    
T  1601073 cgtatctcggatcagttgctctcctctattgcaaaggaaaatcctcctttgaggaggcttg 1601013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 532692 - 532630
Alignment:
Q  107 ctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacg 169  Q
    ||||||||||| ||||  |||||||||||||||||||||| |||  ||||| |||| ||||||    
T  532692 ctctttcattatcacttttcaaactccgcaaggttaatctttctactcatgactacatcaacg 532630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 7225324 - 7225378
Alignment:
Q  96 tggactagaggctctttcattagcactcatcaaactccgcaaggttaatctctct 150  Q
    |||| ||||||||||||||| ||||||  |||||||||| | |||||||||||||    
T  7225324 tggagtagaggctctttcatcagcacttttcaaactccgtagggttaatctctct 7225378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 550
Target Start/End: Original strand, 3438101 - 3438226
Alignment:
Q  425 tcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatctcatttttgttatctaagtcga 524  Q
    ||||| |||||||| | | ||||||||||||| |||||||| |||  | ||||| |||| |||| |||| ||| |||||  | | ||||||| ||||       
T  3438101 tcctctattgcaattggaggtcttcctttgagaaggcttgtcctccacaattgcaccggctatagttatgctgaaatcttttctctgttatccaagtgtc 3438200  T
Q  525 aacgtatccaacatttggatcttcaa 550  Q
    || |||| ||||||||||||||||||    
T  3438201 aatgtatacaacatttggatcttcaa 3438226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 533 - 607
Target Start/End: Original strand, 19468064 - 19468138
Alignment:
Q  533 caacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgat 607  Q
    ||||||||||||||||||  |||||  |||||||||||||| | ||||| | |||||||||||||||||||||||    
T  19468064 caacatttggatcttcaacgtgctgggtttttgaatgatcactatgttgataagttgtctttgtttcttggtgat 19468138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 19467627 - 19467672
Alignment:
Q  101 tagaggctctttcattagcactcatcaaactccgcaaggttaatct 146  Q
    |||||||||||||| | |||||  ||||||||||||||||||||||    
T  19467627 tagaggctctttcacttgcacttctcaaactccgcaaggttaatct 19467672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 634
Target Start/End: Original strand, 38266985 - 38267213
Alignment:
Q  407 atctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatc-tca 505  Q
    ||||| ||||| ||||| ||||| ||||||||| ||||||||||||||| ||| ||||  ||| | |||||| |||| || ||||  ||||||||| |      
T  38266985 atctccgatcacttcctttcctctattgcaatgcaaagtcttcctttgacgagccttggcctcggatattgcaccggctacactttctctggaatcttgc 38267084  T
Q  506 tttttgttatctaagtcgaaacgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtg 605  Q
    ||||| |||||  | |    |||||| ||||||||||| |||||| |  |||||||| | | ||||||   |||||| ||||||||||||||||||  |     
T  38267085 ttttttttatcctactgtccacgtatacaacatttggaccttcaagaaactgattttctcactgatcaccatgttgccgagttgtctttgtttcttcctc 38267184  T
Q  606 atctgctctctatcaaccttggtaattgt 634  Q
    ||||| | ||||| |||||| || |||||    
T  38267185 atctggtgtctataaaccttagttattgt 38267213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 533 - 603
Target Start/End: Complemental strand, 460 - 390
Alignment:
Q  533 caacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttgg 603  Q
    |||||||||||||||||| ||||    ||| |||||||||||  |||||| ||||||||||||||||||||    
T  460 caacatttggatcttcaaaatgccatgtttatgaatgatcatgatgttgcagagttgtctttgtttcttgg 390  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 527 - 625
Target Start/End: Original strand, 1037214 - 1037312
Alignment:
Q  527 cgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatctgctctctatcaacctt 625  Q
    ||||| |||||||||||||||||| ||||    ||| ||||||||||   ||| || |||||||||||||||||||||||| || | ||||| ||||||    
T  1037214 cgtatacaacatttggatcttcaaaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaacctt 1037312  T

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