View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8362_low_13 (Length: 230)
Name: NF8362_low_13
Description: NF8362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8362_low_13 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold1155 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 9587384 - 9587161
Alignment:
| Q |
7 |
tcaagtctcttgtttcccattgaaactcacatcgctcaatctctccggtcaatcctgcattcccgcaattgggttgcaagctttctccttaaagattaca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9587384 |
tcaagtctcttgtttcccattgaaactcacatcgctcaatctctccagtcaatcctgcattcccgcaattgggttgcatgctttctccttaaagattaca |
9587285 |
T |
|
| Q |
107 |
acgttgacatctctcatttgttcgaacatccgtgttttcaatagtaatgacttgttcctcattgccaaatgtttcccttttcttgaaatacttgacctaa |
206 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9587284 |
acgttgacatctctcatttgttcaaacatccgtgttttcaatagtaatgacttgttcctcattgccaaatgtttccctttacttgaaatacttgacctaa |
9587185 |
T |
|
| Q |
207 |
gtgaccctttaatttgtgacgaca |
230 |
Q |
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|||||||||||||||||||||||| |
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| T |
9587184 |
gtgaccctttaatttgtgacgaca |
9587161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 9581814 - 9581597
Alignment:
| Q |
6 |
atcaagtctcttgtttcccattgaaactcacatcgctcaatctctccggtcaatcctgcattcccgcaattgggttgcaagctttctccttaaagattac |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| || ||| ||| |||||||||| |||||||||| |
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| T |
9581814 |
atcaagtctcttgtttcccattgaaactcacatcgctcaatctctcccaccaatcctacattcctgctgatggactgcgagctttctccgtaaagattac |
9581715 |
T |
|
| Q |
106 |
aacgttgacatctctcatttgttcgaacatccgtgttttcaatagtaatgacttgttcctcattgccaaatgtttcccttttcttgaaatacttgaccta |
205 |
Q |
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|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||| |
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| T |
9581714 |
aacgttgacatctctcatttgttcgaacatccgtattttcaatagtaatgacttgttcctcattgccgaatgttttcctttacttgaaatacttgacctc |
9581615 |
T |
|
| Q |
206 |
agtgaccctttaatttgt |
223 |
Q |
| |
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| || ||||||| ||||| |
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| T |
9581614 |
aatggccctttattttgt |
9581597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 186
Target Start/End: Complemental strand, 10615777 - 10615657
Alignment:
| Q |
66 |
ttcccgcaattgggttgcaagctttctccttaaagattacaacgttgacatctctcatttgttcgaacatccgtgttttcaatagtaatgacttgttcct |
165 |
Q |
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||||||||| |||||| | |||||||||| |||||||||||| ||||| ||||||| |||||| ||||| | |||||||||| ||| ||||||| |
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| T |
10615777 |
ttcccgcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcacttgttcccacatcgctaacttcaatagtagtgatctgttcct |
10615678 |
T |
|
| Q |
166 |
cattgccaaatgtttcccttt |
186 |
Q |
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||||| ||||||||||||| |
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| T |
10615677 |
tattgcagaatgtttcccttt |
10615657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 553873 - 553767
Alignment:
| Q |
16 |
ttgtttcccattgaaactcacatcgctcaatctctccggtcaatcctgcattcccgcaattgggttgcaagctttctccttaaagattacaacgttgaca |
115 |
Q |
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|||||| |||||||| |||||||| ||| |||||||| || || ||||||||||| |||||||| |||||||||| ||| |||||||| ||||| |
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| T |
553873 |
ttgttttccattgaacctcacatcactcgatctctcccaaaaacccaccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacc |
553774 |
T |
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| Q |
116 |
tctctca |
122 |
Q |
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||||||| |
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| T |
553773 |
tctctca |
553767 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 53760231 - 53760271
Alignment:
| Q |
12 |
tctcttgtttcccattgaaactcacatcgctcaatctctcc |
52 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||| |
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| T |
53760231 |
tctctcgtttcccattgaaactcacatcactcaatctctcc |
53760271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 1481761 - 1481722
Alignment:
| Q |
12 |
tctcttgtttcccattgaaactcacatcgctcaatctctc |
51 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||| |
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| T |
1481761 |
tctcctgtttcccattgaaactcacatcgctcaatatctc |
1481722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 17642873 - 17642990
Alignment:
| Q |
12 |
tctcttgtttcccattgaaactcacatcgctcaatctctccggtcaatcctgcattcccgcaattgggttgcaagctttctccttaaagattacaacgtt |
111 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||| || | ||||||| | | |||||| |||||||||||| || |||||||| || |
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| T |
17642873 |
tctcttgttttccattgaaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaacttt |
17642972 |
T |
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| Q |
112 |
gacatctctcatttgttc |
129 |
Q |
| |
|
||| ||||||| |||||| |
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| T |
17642973 |
gacctctctcacttgttc |
17642990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 9412110 - 9412061
Alignment:
| Q |
144 |
tcaatagtaatgacttgttcctcattgccaaatgtttcccttttcttgaa |
193 |
Q |
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|
||||||| ||||||||||| |||||||| ||||||||||||| |||||| |
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|
| T |
9412110 |
tcaatagcaatgacttgttactcattgctgaatgtttccctttgcttgaa |
9412061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 202
Target Start/End: Complemental strand, 6417156 - 6417020
Alignment:
| Q |
66 |
ttcccgcaattgggttgcaagctttctccttaaagattacaacgttgacatctctcatttgttcgaacatccgtgttttcaatagtaatgacttgttcct |
165 |
Q |
| |
|
|||||| || |||||| | |||||||||| ||||| |||||| ||||| ||||||| |||||| ||||| | |||||| ||| ||| ||||||| |
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|
| T |
6417156 |
ttcccgtaaatgggttacgagctttctcccaaaagaatacaactttgacctctctcacttgttcccacatcgttaatttcaacggtagtgatctgttcct |
6417057 |
T |
|
| Q |
166 |
cattgccaaatgtttcccttttcttgaaatacttgac |
202 |
Q |
| |
|
||||| ||||||||||||| |||||| ||||||| |
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| T |
6417056 |
tattgcagaatgtttccctttgcttgaagaacttgac |
6417020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1155 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1155
Description:
Target: scaffold1155; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 1824 - 1864
Alignment:
| Q |
12 |
tctcttgtttcccattgaaactcacatcgctcaatctctcc |
52 |
Q |
| |
|
||||| ||||||||||||| |||||||| |||||||||||| |
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|
| T |
1824 |
tctctcgtttcccattgaacctcacatcactcaatctctcc |
1864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 8392 - 8352
Alignment:
| Q |
12 |
tctcttgtttcccattgaaactcacatcgctcaatctctcc |
52 |
Q |
| |
|
||||| ||||||||||||| |||||||| |||||||||||| |
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| T |
8392 |
tctctcgtttcccattgaacctcacatcactcaatctctcc |
8352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 30587 - 30627
Alignment:
| Q |
12 |
tctcttgtttcccattgaaactcacatcgctcaatctctcc |
52 |
Q |
| |
|
||||| ||||||||||||| |||||||| |||||||||||| |
|
|
| T |
30587 |
tctctcgtttcccattgaacctcacatcactcaatctctcc |
30627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 51763328 - 51763368
Alignment:
| Q |
12 |
tctcttgtttcccattgaaactcacatcgctcaatctctcc |
52 |
Q |
| |
|
||||| |||||||||||||||||||||| || ||||||||| |
|
|
| T |
51763328 |
tctctcgtttcccattgaaactcacatcacttaatctctcc |
51763368 |
T |
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