View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8362_low_14 (Length: 229)

Name: NF8362_low_14
Description: NF8362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8362_low_14
NF8362_low_14
[»] chr3 (7 HSPs)
chr3 (7-229)||(34526110-34526332)
chr3 (13-223)||(27616542-27616769)
chr3 (60-157)||(34517004-34517101)
chr3 (60-132)||(34505466-34505537)
chr3 (180-223)||(34517098-34517141)
chr3 (7-54)||(34505392-34505439)
chr3 (11-58)||(34486641-34486689)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 34526110 - 34526332
Alignment:
Q  7 agataaatgaaaattcgaaaaagcagaatatttggaaatctatggtaagttgctaattttccttaccacatgaagcagtttttatttaatgaagagaaca 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34526110 agataaatgaaaattcgaaaaagcagaatatttggaaatctatggtaagttgctaattttccttaccacatgaagcagtttttatttaatgaagagaaca 34526209  T
Q  107 atgatattaaattcagatagactaattcacttataagtttagtttatatttataacatatctaagaacaagagatttgcaaatactgcaacggaaaaaat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34526210 atgatattaaattcagatagactaattcacttataagtttagtttatatttataacatatctaagaacaagagatttgcaaatactgcaacggaaaaaat 34526309  T
Q  207 gtttaatttttaatcatttgcct 229  Q
    ||||||||||||||||| |||||    
T  34526310 gtttaatttttaatcatgtgcct 34526332  T

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Target: chr3; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 27616542 - 27616769
Alignment:
Q  13 atgaaaattcgaaaaagcagaatatttggaaatctatggtaagttgctaa-----------------ttttccttaccacatgaagcagtttttatttaa 95  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||| ||||||    
T  27616542 atgaaaattcgaaaaagcaaaatatttggaaatctatggtaagttgctaacaccatcagctgcataattttccttaccacatgaagcagttttaatttaa 27616641  T
Q  96 tgaagagaacaatgatattaaattcagatagactaattcacttataagtttagtttatatttataacatatctaagaacaagagatttgcaaatactgca 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  27616642 tgaagagaacaatgatattaaattcagatagactaattcacttatgagtttagtttatatttataacatatctaagaacaagagatttgcgaagactgca 27616741  T
Q  196 acggaaaaaatgtttaatttttaatcat 223  Q
    | |||||||||||| |||||||||||||    
T  27616742 aaggaaaaaatgttaaatttttaatcat 27616769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 34517004 - 34517101
Alignment:
Q  60 taattttccttaccacatgaagcagtttttatttaatgaagagaacaatgatattaaattcagatagactaattcacttataagtttagtttatattt 157  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34517004 taattttccttaccacatggagcaatttttatttaatgaagagaacaatgatattaaattcagatagactaattcacttataagtttagtttatattt 34517101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 34505466 - 34505537
Alignment:
Q  60 taattttccttaccacatgaagcagtttttatttaatgaagagaacaatgatattaaattcagatagactaat 132  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  34505466 taattttccttaccacatgaagcagttttaatttaatgaagagaacaatgata-taaattcagatagactaat 34505537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 34517098 - 34517141
Alignment:
Q  180 atttgcaaatactgcaacggaaaaaatgtttaatttttaatcat 223  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  34517098 atttgcaaatactgcaaaggaaaaaatgtttaatttttaatcat 34517141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 34505392 - 34505439
Alignment:
Q  7 agataaatgaaaattcgaaaaagcagaatatttggaaatctatggtaa 54  Q
    ||||| |||||||||| |||||||| ||||||||||||||||||||||    
T  34505392 agatatatgaaaattccaaaaagcaaaatatttggaaatctatggtaa 34505439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 34486641 - 34486689
Alignment:
Q  11 aaatgaaaattcgaaaaagcagaata-tttggaaatctatggtaagttg 58  Q
    |||||||||| ||||||||||||| | ||||||||| ||||||||||||    
T  34486641 aaatgaaaatccgaaaaagcagaacattttggaaatatatggtaagttg 34486689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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