View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8362_low_16 (Length: 204)
Name: NF8362_low_16
Description: NF8362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8362_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 14075053 - 14075223
Alignment:
| Q |
16 |
tggtggtcaatctattgaaatgggaataattcatattggggactttatgggaagattttgttctaatcttggtatgaatcatcaagctgttaaagctgct |
115 |
Q |
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| T |
14075053 |
tggtggtcaatctattgaaatgggaataattcatattggggactttatgggacgattttgttctaatcttggtatgaatcatcaagctgttaaagctgct |
14075152 |
T |
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| Q |
116 |
acggaatctgttcagaattcagaagaatttgatataaggagaagtcccatatcaattgctgcaacagttat |
186 |
Q |
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| T |
14075153 |
acggaatctgttcagaattcagaagaatttgatataaggagaagtcccatatcaattgctgcaacagttat |
14075223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 14150464 - 14150634
Alignment:
| Q |
16 |
tggtggtcaatctattgaaatgggaataattcatattggggactttatgggaagattttgttctaatcttggtatgaatcatcaagctgttaaagctgct |
115 |
Q |
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| T |
14150464 |
tggtggtcaatctgtagaaatgggaacaactcatattggggactttatgggacgattttgttcgaatcttggtatgaatcatcaagctgttaaagctgct |
14150563 |
T |
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| Q |
116 |
acggaatctgttcagaattcagaagaatttgatataaggagaagtcccatatcaattgctgcaacagttat |
186 |
Q |
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| T |
14150564 |
aatgaatctgttcagaattcagaagaatttgatataaggagaagtcccatatcaattgctgcaacagttat |
14150634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 13609996 - 13610166
Alignment:
| Q |
16 |
tggtggtcaatctattgaaatgggaataattcatattggggactttatgggaagattttgttctaatcttggtatgaatcatcaagctgttaaagctgct |
115 |
Q |
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| T |
13609996 |
tggtggtcaatctgtagaaatgggaacaattcatgctggggactttatgagacgattttgttctaatcttggtatgaatcatcaagctgttaaagctgct |
13610095 |
T |
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| Q |
116 |
acggaatctgttcagaattcagaagaatttgatataaggagaagtcccatatcaattgctgcaacagttat |
186 |
Q |
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| T |
13610096 |
caggaatctgttaagaaatcagaggaatttgatataaggagaagtcccataacaattgctgcagcagttat |
13610166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 9e-32; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 36012298 - 36012213
Alignment:
| Q |
69 |
gattttgttctaatcttggtatgaatcatcaagctgttaaagctgctacggaatctgttcagaattcagaagaatttgatataagg |
154 |
Q |
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| T |
36012298 |
gattttgttctaatcttggtatgaatcatcaagctgttaaagctgctcaggaatctgttcagaaatccgaagaatttgatataagg |
36012213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 186
Target Start/End: Complemental strand, 36011363 - 36011329
Alignment:
| Q |
152 |
aggagaagtcccatatcaattgctgcaacagttat |
186 |
Q |
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| T |
36011363 |
aggagaagtcccatatcaattgctgcagcagttat |
36011329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 36012471 - 36012426
Alignment:
| Q |
20 |
ggtcaatctattgaaatgggaataattcatattggggactttatgg |
65 |
Q |
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| T |
36012471 |
ggtcaatctgttgaaatgggaacaattcatgctggggactttatgg |
36012426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 7591666 - 7591728
Alignment:
| Q |
124 |
tgttcagaattcagaagaatttgatataaggagaagtcccatatcaattgctgcaacagttat |
186 |
Q |
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| T |
7591666 |
tgttgagaaatcagaagaatttgatataaggagaagtcccatatcaaatgctgcagcagttat |
7591728 |
T |
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