View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8362_low_3 (Length: 435)
Name: NF8362_low_3
Description: NF8362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8362_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 424
Target Start/End: Complemental strand, 37853884 - 37853456
Alignment:
| Q |
7 |
cacttctctagaatctcactgtggtaactttggtatcatcttcatgtgacattgctagtagcttatgcgtccaacagaagatgacatagtcatcttatgn |
106 |
Q |
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| T |
37853884 |
cacttctctagaatctcactgtggtcattttggtatcatcttcatgtgacattgctagtagcttatgcgtccagcagaagatgacatagtcatcttatgt |
37853785 |
T |
|
| Q |
107 |
nnnnnnng-------acaaatcatctaatgttcttggaaatatttagaaggggattcaaatttaccatctattacctctcaaactctcatattcctctct |
199 |
Q |
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| T |
37853784 |
ttttgttttttttttacaaatcatctaatgttcttggaaatatttagacggggattcaaatttaccatctattacctctcaaactatcatattcctctcc |
37853685 |
T |
|
| Q |
200 |
gtataacatgtatttggtaatatgatgagtatgtcagaatcactaaaagctgcaatttgtaacttcattaaaatgacgttaggtcgtcgtgattttgata |
299 |
Q |
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|||||||||||||||| ||||| ||||||| ||||||||||||||||||||| ||||| ||||||| ||||||| ||||| ||||||||||||| | ||| |
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| T |
37853684 |
gtataacatgtatttgataatacgatgagtgtgtcagaatcactaaaagctgtaatttataacttctttaaaatcacgttgggtcgtcgtgattctaata |
37853585 |
T |
|
| Q |
300 |
tatctaccgtgatatcaaacatagactaattaggattgggtgattttgtgagaaaaagtcaccatggctttctctgtctcttttatgtatta----ctct |
395 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| |
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| T |
37853584 |
tatctaccgtgatatcaaacatagactaattaggatttaatgattttgtgagaaaaagtcaccatggctttctctgtctcttttatatatcactctctct |
37853485 |
T |
|
| Q |
396 |
ctctcgtcttaactttgtttctcattcat |
424 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
37853484 |
ctctcgtcttaactttgtttctcattcat |
37853456 |
T |
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