View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8362_low_5 (Length: 287)
Name: NF8362_low_5
Description: NF8362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8362_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 47691142 - 47690870
Alignment:
| Q |
1 |
gtttaaaccttgttctaatatgggatcaacgatatctgaacttgtccctgccttccaatttttccatgcctgcaagaatttgctcnnnnnnnnnnnnnca |
100 |
Q |
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| T |
47691142 |
gtttaaaccttgttctaatatgggatcaacgatatctgaacttgtccctgccttccaatttttccatgcctgaaagaatttgctcaaaaaagaaaaaaca |
47691043 |
T |
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| Q |
101 |
atatatacaatcaattttttgactgagaaatctctaactataagattcagtttaatttgnnnnnnn-tattttctatttttattgttaaaaatttgctca |
199 |
Q |
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| T |
47691042 |
atatatacaatcaattttttgactgagaaatctctaactataagattcattttaatttgaaaaaaaatattttctatttttattgttaaaaatttgctca |
47690943 |
T |
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| Q |
200 |
ttttaattttctagtggaaagacgcagttcgtctcttgaagtgaatcattttgaaagagacaaagtgaaatgt |
272 |
Q |
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| T |
47690942 |
ttttaattttctagtggaaagacgcagttcgtctcttgaagtgaatcattttgaaagagacaaagtgaaatgt |
47690870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 47679479 - 47679403
Alignment:
| Q |
5 |
aaaccttgttctaatatgggatcaacgatatctgaacttgtccctgccttccaatttttccatgcctgcaagaattt |
81 |
Q |
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|||||||| | |||||| ||||| || ||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
47679479 |
aaaccttggtgtaatattggatctacaatatctgaagttgtccctgctttccaatttttccatgcctgcaagaattt |
47679403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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