View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8362_low_8 (Length: 252)
Name: NF8362_low_8
Description: NF8362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8362_low_8 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 97 - 252
Target Start/End: Complemental strand, 47691805 - 47691651
Alignment:
| Q |
97 |
cacacacagtctaacgtgcttctttaaatcttctttctatctaacgtgcttacgatagtaaatcacaaaattgcacgacgaaacatatcatggataatgt |
196 |
Q |
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| T |
47691805 |
cacacacagtctaacgtgcttctttaaatattctttctgtctaacgtgcttacgatagtaaatcacaaaattgcacgacgaa-catatcatggataatgt |
47691707 |
T |
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| Q |
197 |
gataggtaatagatatgtaaataattgggttatataaaaccatatgatatatgata |
252 |
Q |
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| T |
47691706 |
gataggtaatagatatgtaaataattgggttatataaaaccatatgatatatgata |
47691651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 240
Target Start/End: Complemental strand, 47680112 - 47680000
Alignment:
| Q |
116 |
ttctttaaatcttctttctatctaacgtgcttacgatagtaaatcacaaaattgcacgacgaaacatatcatggataatgtgataggtaatagatatgta |
215 |
Q |
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| T |
47680112 |
ttctttacattttcattctgtctaacgtgcttacgatagtaaattacaaaattgc------------atcacggataatgtgataggtaatagatatata |
47680025 |
T |
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| Q |
216 |
aataattgggttatataaaaccata |
240 |
Q |
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| T |
47680024 |
aatagctgggttatttaaaaacata |
47680000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 47691844 - 47691813
Alignment:
| Q |
44 |
ttgttatctctcatcattagttctataaacac |
75 |
Q |
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| T |
47691844 |
ttgttatctctcatcattagttctataaacac |
47691813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 19973159 - 19973193
Alignment:
| Q |
47 |
ttatctctcatcattagttctataaacactttctc |
81 |
Q |
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| T |
19973159 |
ttatccctcatcattagttctataaacactttctc |
19973193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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