View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8362_low_9 (Length: 250)

Name: NF8362_low_9
Description: NF8362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8362_low_9
NF8362_low_9
[»] chr3 (12 HSPs)
chr3 (1-250)||(34526574-34526810)
chr3 (168-250)||(27617216-27617298)
chr3 (168-250)||(34506001-34506083)
chr3 (1-152)||(27632597-27632745)
chr3 (1-152)||(34517389-34517537)
chr3 (78-152)||(27617094-27617168)
chr3 (148-230)||(27632792-27632874)
chr3 (78-152)||(34505879-34505953)
chr3 (148-230)||(34517584-34517666)
chr3 (148-250)||(34478052-34478154)
chr3 (84-150)||(34462898-34462964)
chr3 (84-152)||(34477940-34478008)
[»] chr7 (1 HSPs)
chr7 (179-250)||(15741207-15741278)
[»] chr6 (1 HSPs)
chr6 (179-250)||(1575098-1575169)
[»] chr2 (2 HSPs)
chr2 (198-250)||(10533726-10533778)
chr2 (198-250)||(10526911-10526963)
[»] scaffold1215 (1 HSPs)
scaffold1215 (198-250)||(911-963)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 34526574 - 34526810
Alignment:
Q  1 catgtttgttgtgttccctagaagcatctttcttgccatgcacttcccaatgaacattttgtacgccgnnnnnnnnccgaggtttccaaatccactatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||    
T  34526574 catgtttgttgtgttccctagaagcatctttcttgccatgcacttcccaatgaacattttgtacgccgttttttttccgaggtttccaaatccactatgt 34526673  T
Q  101 agaaagcatacatcgttatatcagaataatgaattggattagataagaatcacaagataatttacagataccttctgtgagattgggaagcttgtgttct 200  Q
    |||||||||||||||||||||             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34526674 agaaagcatacatcgttatat-------------tgggttagataagaatcacaagataatttacagataccttctgtgagattgggaagcttgtgttct 34526760  T
Q  201 gaaccatcctgattgcatcctcccctaagctttcatcacacacaggacaa 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34526761 gaaccatcctgattgcatcctcccctaagctttcatcacacacaggacaa 34526810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 27617216 - 27617298
Alignment:
Q  168 ataccttctgtgagattgggaagcttgtgttctgaaccatcctgattgcatcctcccctaagctttcatcacacacaggacaa 250  Q
    ||||||| ||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27617216 ataccttttgtgagattgggaagcttgagttcttcaccatcctgattgcatcctcccctaagctttcatcacacacaggacaa 27617298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 34506001 - 34506083
Alignment:
Q  168 ataccttctgtgagattgggaagcttgtgttctgaaccatcctgattgcatcctcccctaagctttcatcacacacaggacaa 250  Q
    ||||||| ||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34506001 ataccttttgtgagattgggaagcttgagttcttcaccatcctgattgcatcctcccctaagctttcatcacacacaggacaa 34506083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 27632597 - 27632745
Alignment:
Q  1 catgtttgttgtgttccctagaagcatctttcttgccatgcacttcccaatgaacattttgtacgccgnnnnnnnnccgaggtttccaaatccactatgt 100  Q
    ||||||||||| ||||||  ||||||||||||||| |||||| |||||||||||||| |   || |||        |||||| |||||||||| ||||||    
T  27632597 catgtttgttgggttcccaggaagcatctttcttgtcatgcaattcccaatgaacatgtgagactccgtttct---ccgagggttccaaatcccctatgt 27632693  T
Q  101 agaaagcatacatcgttatatcagaataatgaattggattagataagaatca 152  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||||||||||    
T  27632694 agaaagcatacatcgttatatcagcataatgaattgggttatataagaatca 27632745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 34517389 - 34517537
Alignment:
Q  1 catgtttgttgtgttccctagaagcatctttcttgccatgcacttcccaatgaacattttgtacgccgnnnnnnnnccgaggtttccaaatccactatgt 100  Q
    ||||||||||| ||||||  ||||||||||||||| |||||| |||||||||||||| |   || |||        |||||| |||||||||| ||||||    
T  34517389 catgtttgttgggttcccaggaagcatctttcttgtcatgcaattcccaatgaacatgtgagactccgtttct---ccgagggttccaaatcccctatgt 34517485  T
Q  101 agaaagcatacatcgttatatcagaataatgaattggattagataagaatca 152  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||||||||||    
T  34517486 agaaagcatacatcgttatatcagcataatgaattgggttatataagaatca 34517537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 27617094 - 27617168
Alignment:
Q  78 cgaggtttccaaatccactatgtagaaagcatacatcgttatatcagaataatgaattggattagataagaatca 152  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||    
T  27617094 cgaggcttccaaatccactatgtagaaagcatacatcgttatatcagcataataaattgggttagataagaatca 27617168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 27632792 - 27632874
Alignment:
Q  148 aatcacaagataatttacagataccttctgtgagattgggaagcttgtgttctgaaccatcctgattgcatcctcccctaagc 230  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||| ||| |||||| ||||||||||||||||||||||||||||    
T  27632792 aatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaagc 27632874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 34505879 - 34505953
Alignment:
Q  78 cgaggtttccaaatccactatgtagaaagcatacatcgttatatcagaataatgaattggattagataagaatca 152  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||    
T  34505879 cgaggcttccaaatccactatgtagaaagcatacatcgttatatcagcataataaattgggttagataagaatca 34505953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 34517584 - 34517666
Alignment:
Q  148 aatcacaagataatttacagataccttctgtgagattgggaagcttgtgttctgaaccatcctgattgcatcctcccctaagc 230  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||| ||| |||||| ||||||||||||||||||||||||||||    
T  34517584 aatcacaagataagttacagataccttttgtgagatttggaagattgagttctgcaccatcctgattgcatcctcccctaagc 34517666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 34478052 - 34478154
Alignment:
Q  148 aatcacaagataatttacagataccttctgtgagattgggaagcttgtgttctgaaccatcctgattgcatcctcccctaagctttcatcacacacagga 247  Q
    |||||||||||||   |||||||||||  | |||  ||| |||| || |||||| ||||||||| |||||||||||||||||||||||||||||| ||||    
T  34478052 aatcacaagataagcaacagatacctttggcgaggatggtaagcgtgagttctgcaccatcctggttgcatcctcccctaagctttcatcacacaaagga 34478151  T
Q  248 caa 250  Q
    |||    
T  34478152 caa 34478154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 34462898 - 34462964
Alignment:
Q  84 ttccaaatccactatgtagaaagcatacatcgttatatcagaataatgaattggattagataagaat 150  Q
    |||||||| | ||||||||||||||||||| || ||||||  |||||||||||  ||||||||||||    
T  34462898 ttccaaatgccctatgtagaaagcatacattgtaatatcaccataatgaattgatttagataagaat 34462964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 34477940 - 34478008
Alignment:
Q  84 ttccaaatccactatgtagaaagcatacatcgttatatcagaataatgaattggattagataagaatca 152  Q
    |||||||| | |||||||| ||||||||||  ||||| ||  |||||||||||  ||||||||||||||    
T  34477940 ttccaaattccctatgtaggaagcatacatttttataccaccataatgaattgatttagataagaatca 34478008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 15741278 - 15741207
Alignment:
Q  179 gagattgggaagcttgtgttctgaaccatcctgattgcatcctcccctaagctttcatcacacacaggacaa 250  Q
    ||||||||||||||||   |||| |||||||||||| |||||||||||||  ||| ||||||||||||||||    
T  15741278 gagattgggaagcttgaactctgcaccatcctgattacatcctcccctaaatttttatcacacacaggacaa 15741207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 1575098 - 1575169
Alignment:
Q  179 gagattgggaagcttgtgttctgaaccatcctgattgcatcctcccctaagctttcatcacacacaggacaa 250  Q
    ||||||||||||||||   |||| |||||||||||| |||||||||||||  ||| ||||||||||||||||    
T  1575098 gagattgggaagcttgaactctgcaccatcctgattacatcctcccctaaatttttatcacacacaggacaa 1575169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 10533726 - 10533778
Alignment:
Q  198 tctgaaccatcctgattgcatcctcccctaagctttcatcacacacaggacaa 250  Q
    |||| |||||||||||| |||||||||||||| ||| ||||||||||||||||    
T  10533726 tctgcaccatcctgattacatcctcccctaagtttttatcacacacaggacaa 10533778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 10526911 - 10526963
Alignment:
Q  198 tctgaaccatcctgattgcatcctcccctaagctttcatcacacacaggacaa 250  Q
    |||| |||||||||||| ||||||||| |||  ||| ||||||||||||||||    
T  10526911 tctgcaccatcctgattacatcctcccttaaatttttatcacacacaggacaa 10526963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1215 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 911 - 963
Alignment:
Q  198 tctgaaccatcctgattgcatcctcccctaagctttcatcacacacaggacaa 250  Q
    |||| |||||||||||| ||||||||| |||  ||| ||||||||||||||||    
T  911 tctgcaccatcctgattacatcctcccttaaatttttatcacacacaggacaa 963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University