View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8363_high_5 (Length: 306)
Name: NF8363_high_5
Description: NF8363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8363_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 9161994 - 9162271
Alignment:
| Q |
11 |
atattaccaaaagctttcttatcctgcacataacagaaaagcacgtgcgatgttcagccaggtttttaaattaaactgttgagagttcctggtcaatgtt |
110 |
Q |
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| T |
9161994 |
atattaccaaaagctttcttatcctgcacataacagaaaagcacgtgcgatgttcagccaggtttttaaattaaactgttgagagttcctggtcaatgtt |
9162093 |
T |
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| Q |
111 |
ctgaccaatttaactatcaatccaaccagataatatgaaaaagagcagtaaatatttatgccagtatacacgaacaagagaaggcaattatactagctag |
210 |
Q |
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| T |
9162094 |
ctgaccaatttaactatcaatccaaccagataatatgaaaaagagcagtaaatacttatgccagtatacacgaacaagagaaggcaattatactagctag |
9162193 |
T |
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| Q |
211 |
aaagtgggaacaagcctcgcatccactagcaaaggggagaagtatatgttcctcacttgtcttaatgctgccacttgt |
288 |
Q |
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| T |
9162194 |
aaagtgggaacaagcctcgcatccactatcaaaggggagaagtatacgttcctcacttgtcttaatgctgccacttgt |
9162271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 6 - 262
Target Start/End: Original strand, 9149327 - 9149583
Alignment:
| Q |
6 |
tcaggatattaccaaaagctttcttatcctgcacataacagaaaagcacgtgcgatgttcagccaggtttt--taaattaaactgttgagagttcctggt |
103 |
Q |
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| T |
9149327 |
tcaggatattagcaaaagcttccttatcctgcacataacaaacaagcacgtgcaatgttcagccatgttttaaaaaaataaactgatgagagttcctggt |
9149426 |
T |
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| Q |
104 |
caatgttctgaccaatttaactatcaatccaaccagataatatgaaaaagag-cagtaaatatttatgccagtatacacgaacaagagaaggcaattata |
202 |
Q |
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| T |
9149427 |
caatgttctgaccaatt--actatcaatccaaccagataacatgaaaaagagaaagtaaatagttatg-cagtat--acgaacaagagaaggcaattata |
9149521 |
T |
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| Q |
203 |
ctagctagaaagtgggaacaagcctcgcatc-cactagcaaagggga-gaagtatatgttcc |
262 |
Q |
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| T |
9149522 |
ctagctgggaagtgggaacaagtctcgcatcgcgctagaaaaggggaggaagaatatgttcc |
9149583 |
T |
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