View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8363_low_2 (Length: 472)
Name: NF8363_low_2
Description: NF8363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8363_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 227 - 456
Target Start/End: Original strand, 50245039 - 50245270
Alignment:
| Q |
227 |
cttttctatatttccctcttcgtcctcttggtcaaggtgtagcactgttttgggatgtaatttctgatagacagacacaaaatgataaaatttaggctag |
326 |
Q |
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| T |
50245039 |
cttttctatatttccctcttcgtcctcttggtcaaggtgtagcactgttttgggatgaaatttctgatagacagacacaaaatgataaaatttaggctag |
50245138 |
T |
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| Q |
327 |
ttctatcttacataaatgagttaagctgtaccatatatgaatttgtttctaccattatatcaatcagtcatattaaaagatcaagt--gacatgattatt |
424 |
Q |
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| T |
50245139 |
ttctatcttacataaatgagttaagctgtaccatatatgaatttgtttctaccattatatcaatcagtcatattaaaagatcaagtgagacatgattatt |
50245238 |
T |
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| Q |
425 |
cttnnnnnnnngtgagatataattatatttat |
456 |
Q |
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| T |
50245239 |
cttaaaaaaaagtgagatataattatatttat |
50245270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 50244818 - 50244959
Alignment:
| Q |
7 |
ggagaagcagagagagaagtaaaaaagggactgttaaaatgtgagttcttggacgtaagagagggtgttgaagagttctttgaagttcaggtgaattcag |
106 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50244818 |
ggagaaacagagagagaagtaaaaaagggactgttaaaatgtgagttcttggacgtaagagagggtgttgaagagttctttgaagttcaggtgaattcag |
50244917 |
T |
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| Q |
107 |
caatggttttttgaggcaggccatgataattttcaaagaagg |
148 |
Q |
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| T |
50244918 |
caatggttttttgaggcaggccatgataattttcaaagaagg |
50244959 |
T |
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