View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8363_low_4 (Length: 423)

Name: NF8363_low_4
Description: NF8363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8363_low_4
NF8363_low_4
[»] chr5 (1 HSPs)
chr5 (18-414)||(3408162-3408562)


Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 3408562 - 3408162
Alignment:
Q  18 aatagaaacttttagcctctaatgacaatatatgccactagtggtttttctagaccgatttcaatacaaatctgtgtgaattgtcatcgtgagtggat-- 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  3408562 aatagaaacttttagcctctaatgacaatatatgccactagtggtttttctagaccgatttcaatacaaatctgtgtgaattgtcatcgtgagtggatgg 3408463  T
Q  116 --tgatgtaagaaaatcaaccttaa---gcatcatctcgagagagagggttgttctaatacgagtaaggaattctatgctataaagattcgtggagacat 210  Q
      |||||||||||||||||||||||   |||||||||||||      |||| ||||||||||||||||||||||||||||||||||||| |||||||||     
T  3408462 attgatgtaagaaaatcaaccttaattagcatcatctcgag------ggttattctaatacgagtaaggaattctatgctataaagatttgtggagacac 3408369  T
Q  211 gtggtatacaaatttgtaccaaaatatttttcataatgttcgtagtttgaagaaacatgtgacgccattgttggaccattatatagtgtc---nnnnnnn 307  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||              
T  3408368 gtggtatacaaatttgtaccaaaatatttttcataatgttggtagtttgaagaaacatgtgacgccattgttggaccattatatagtgtcaaaaaaaaaa 3408269  T
Q  308 tcctccacggccctttgaacagtgcgtgttattaatccttttcttggttaaaacagacaagaaagtagccatcaaccattgagatacttccattctttgt 407  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3408268 tcctccacgtccctttgaacagcgcgtgttattaatccttttcttggttaaaacagacaagaaagtagccatcaaccattgagatacttccattctttgt 3408169  T
Q  408 tcttctc 414  Q
    || ||||    
T  3408168 tcatctc 3408162  T

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