View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8363_low_8 (Length: 324)
Name: NF8363_low_8
Description: NF8363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8363_low_8 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 2 - 324
Target Start/End: Complemental strand, 2345020 - 2344694
Alignment:
| Q |
2 |
cagaaataaataagaacagcgagcagttattgacaaatgacattgatatgttgaaatgaatcaaacttggcacatttcatgctaatcaattggttattag |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2345020 |
cagaaataaataagaacagcgagcagttattgacaaatgacattgatatgttgaaatgaatcaaacttggcacatttcatgctaatcaattggctattag |
2344921 |
T |
|
| Q |
102 |
taatattctttacgtcggtttgaatattacacagtactaataatatattatttcatttcagttatat----gatcactctacctaagcttgattagattt |
197 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2344920 |
taatattctttacgtcggtttgattattacacagtactaataatatattatttcatttcagttatatatatgatcactctacctaagcttgattagattt |
2344821 |
T |
|
| Q |
198 |
ttgactctaattatataaataaatctacatgggaaagaagcagacctgagaagctggggcattgtcatcaataaaaggtgctgctagacttataaacgaa |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2344820 |
ttgactctaattatataaataaatctacatgggaaagaagcagacctgagaagctggggcattgtcatcaataaaaggtgctgctagacttataaacgaa |
2344721 |
T |
|
| Q |
298 |
gcctctccaacaccaaccagcctatac |
324 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
2344720 |
gcctctccaacaccaaccagcctatac |
2344694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 140 - 322
Target Start/End: Complemental strand, 2324738 - 2324557
Alignment:
| Q |
140 |
aataatatattatttcatttcagttatatgatcactctacctaagcttgattagatttttgactctaattatataaataaatctacatgggaaagaagca |
239 |
Q |
| |
|
|||| ||||||||||||||||| |||| | |||||||| |||||| ||||||| ||||| ||| ||| ||| || ||||||||| |||||| || || |
|
|
| T |
2324738 |
aatagtatattatttcatttca-ttatgttatcactctgcctaagtttgattatattttcaactacgattgtatcaagaaatctacaagggaaataaaca |
2324640 |
T |
|
| Q |
240 |
gacctgagaagctggggcattgtcatcaataaaaggtgctgctagacttataaacgaagcctctccaacaccaaccagcctat |
322 |
Q |
| |
|
||||||| ||||||||| ||||||||||| ||||| ||||||| |||||||||||| ||||| |||||||||||||| |||| |
|
|
| T |
2324639 |
aacctgaggagctggggcgttgtcatcaatgaaaggggctgctaaacttataaacgatgcctcaccaacaccaaccagactat |
2324557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 245 - 324
Target Start/End: Complemental strand, 2337891 - 2337812
Alignment:
| Q |
245 |
gagaagctggggcattgtcatcaataaaaggtgctgctagacttataaacgaagcctctccaacaccaaccagcctatac |
324 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2337891 |
gagaagccggggcgttgtcatcaatgaaaggtggtgctaaacttataaacgaagcctcgccaacaccaaccagcctatac |
2337812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 321
Target Start/End: Original strand, 36798469 - 36798562
Alignment:
| Q |
228 |
gggaaagaagcagacctgagaagctggggcattgtcatcaataaaaggtgctgctagacttataaacgaagcctctccaacaccaaccagccta |
321 |
Q |
| |
|
||||||| | || ||||| ||||||||||| || |||||||| ||||||||||| ||||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
36798469 |
gggaaagtaacaaacctgtgaagctggggcgttatcatcaatgaaaggtgctgcaagacttataaatgaagcctcgccaacaccaacgagccta |
36798562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University