View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8364_high_12 (Length: 306)
Name: NF8364_high_12
Description: NF8364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8364_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 20 - 281
Target Start/End: Complemental strand, 3379144 - 3378883
Alignment:
| Q |
20 |
gtcttcacaagtaactagaaagtatatacatccattgatgcaaactggatgtggcttgacgtacacaaaattaggacctccttccaccacacgccagcct |
119 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3379144 |
gtcttcataagtaactagaaagtatatacatccattgatgcaaactggatgtggcttgacgtacacaaaattaggacctccttccaccacacgccagcct |
3379045 |
T |
|
| Q |
120 |
tgggttcctaaggtgaaaacctctataactggtggtaaatgatcaaatatgaaatccaaagaagaaattctcactagtttataacacctactgtcttctt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3379044 |
tgggttcctaaggtgaaaacctctataactggtggtaaatgatcaaatatgaaatccaaagaagaaattctcactagtttataacagctactgtcttctt |
3378945 |
T |
|
| Q |
220 |
gacaaccaagtgcaacaacaacagttttaggatccatgtccataccaggtactctatgatac |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3378944 |
gacaaccaagtgcaacaacaacagttttaggatccatgtccataccaggtactctatgatac |
3378883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University