View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8364_high_16 (Length: 263)
Name: NF8364_high_16
Description: NF8364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8364_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 23 - 252
Target Start/End: Complemental strand, 40689979 - 40689750
Alignment:
| Q |
23 |
cgcctcatatggccacctagtgcttgaccagatgtgaattcagaaccacaaatggaacactcatgaaccttagacttgttgttattgttgcttccaccat |
122 |
Q |
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| T |
40689979 |
cgcctcatatggccacctagtgcttgaccagatgtgaattcagaaccacaaatggaacactcatgaaccttagacttgttgttattgttgcttccaccat |
40689880 |
T |
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| Q |
123 |
gtagatttcccttaccattgttattcaattgaagggaaattgatttatgattgggtttgaattgaaactcttgatcatcatcatataagtgctttttctc |
222 |
Q |
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| T |
40689879 |
gtagatttcccttaccattgttattcaattgaagagaaattgatttatgattgggtttgaattgaaactcttgatcatcatcatataagtgctttttctc |
40689780 |
T |
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| Q |
223 |
ttgagcaattgctaaagcttttggtttctt |
252 |
Q |
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| T |
40689779 |
ttgagcaattgctaaagcttttggtttctt |
40689750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 34710589 - 34710513
Alignment:
| Q |
27 |
tcatatggccacctagtgcttgaccagatgtgaattcagaaccacaaatggaacactcatgaaccttagacttgttg |
103 |
Q |
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| T |
34710589 |
tcatatggccaccaagtgcctggccagatgtgaatttagaaccacaaatggagcacccataaaccttggatttgttg |
34710513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 34714111 - 34714059
Alignment:
| Q |
144 |
tattcaattgaagggaaattgatttatgattgggtttgaattgaaactcttga |
196 |
Q |
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| T |
34714111 |
tattcaatttaagggaaattgatttattattggttttgaattgaaactcttga |
34714059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 34714285 - 34714219
Alignment:
| Q |
27 |
tcatatggccacctagtgcttgaccagatgtgaattcagaaccacaaatggaacactcatgaacctt |
93 |
Q |
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| T |
34714285 |
tcatatggccaccaagtgcctggccagatgtgaatttagaaccacaaatggagcacccataaacctt |
34714219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 20925729 - 20925806
Alignment:
| Q |
25 |
cctcatatggccacctagtgcttgaccagatgtgaattcagaaccacaaatggaacactcatgaaccttagacttgtt |
102 |
Q |
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| T |
20925729 |
cctcatgtgtccacccaatgcttgtccggatgtgaactctgaaccacaaatggaacactcatgaatcttggccttgtt |
20925806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 35506246 - 35506177
Alignment:
| Q |
25 |
cctcatatggccacctagtgcttgaccagatgtgaattcagaaccacaaatggaacactcatgaacctta |
94 |
Q |
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| T |
35506246 |
cctcatgtgaccacccaatgcttgacctgatgtgaattcagctccacatattgaacacccatgaacctta |
35506177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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