View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8364_high_21 (Length: 239)
Name: NF8364_high_21
Description: NF8364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8364_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 45595606 - 45595383
Alignment:
| Q |
1 |
ttggtgaatgaagattgataaagcattgtttgaactggtttcttatttaatctacatgtaactaatatcaggaaaagttggcatctattgaagagcttga |
100 |
Q |
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| T |
45595606 |
ttggtgaatgaagattgataaagcattgtttgaactggtttcttatttaatctacatgtaactaatatcaggaaaagttggcatctattgaagagcttga |
45595507 |
T |
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| Q |
101 |
accattttctaatcatgcgtcgcaaatggctgctcttgactatattgtatctgttgaaagtgatgtatttgtacattcttaccctggcaacatggcgcga |
200 |
Q |
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| T |
45595506 |
accattttctaatcatgcgtcgcaaatggctgctcttgactatattgtatctgttgaaagtgatgtatttgtacattcttaccctggcaacatggcgcga |
45595407 |
T |
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| Q |
201 |
gcggttgaaggccatcgtcgtttt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
45595406 |
gcggttgaaggccatcgtcgtttt |
45595383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 63 - 224
Target Start/End: Complemental strand, 27149117 - 27148956
Alignment:
| Q |
63 |
taatatcaggaaaagttggcatctattgaagagcttgaaccattttctaatcatgcgtcgcaaatggctgctcttgactatattgtatctgttgaaagtg |
162 |
Q |
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|||| |||||||| ||||||||| ||||| ||||||||||| |||| ||||||||| || |||||||||||||||||||||||||||||| | || |||| |
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| T |
27149117 |
taatttcaggaaacgttggcatccattgaggagcttgaacccttttttaatcatgcttctcaaatggctgctcttgactatattgtatctatcgagagtg |
27149018 |
T |
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| Q |
163 |
atgtatttgtacattcttaccctggcaacatggcgcgagcggttgaaggccatcgtcgtttt |
224 |
Q |
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| T |
27149017 |
atgtatttataccctcttattctggaaacatggcaagggctgttgaaggtcatcgccgtttt |
27148956 |
T |
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