View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8364_high_24 (Length: 236)

Name: NF8364_high_24
Description: NF8364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8364_high_24
NF8364_high_24
[»] chr5 (14 HSPs)
chr5 (1-123)||(30715173-30715296)
chr5 (27-123)||(30433711-30433808)
chr5 (1-76)||(30058119-30058194)
chr5 (150-224)||(30715613-30715687)
chr5 (150-224)||(30747152-30747226)
chr5 (150-224)||(30057718-30057792)
chr5 (150-224)||(30679448-30679522)
chr5 (14-123)||(29869947-29870058)
chr5 (54-123)||(30398304-30398374)
chr5 (1-64)||(29851239-29851302)
chr5 (1-41)||(30747609-30747649)
chr5 (150-205)||(29869516-29869571)
chr5 (1-35)||(30398377-30398411)
chr5 (1-41)||(30244515-30244555)
[»] chr4 (1 HSPs)
chr4 (12-114)||(20298606-20298708)


Alignment Details
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 30715173 - 30715296
Alignment:
Q  1 atatcagtatctaaacatcagacatgtcatcaatatgaagtgttggtgctacattaatttgaataatttacaaagaatgaaatggaaatttgaatatagg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||    
T  30715173 atatcagtatctaaacatcagacatgtcatcaatatgaagtgttggtgctacattaatttgaataatttacaaacagtgaaatggaaatttgaatattgg 30715272  T
Q  101 tgaatgagtgtt-ggtgcagaaca 123  Q
    ||||||| | || |||||||||||    
T  30715273 tgaatgattattgggtgcagaaca 30715296  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 30433808 - 30433711
Alignment:
Q  27 tcatcaatatgaagtgttggtgctacattaatttgaataatttacaaagaatgaaatggaaatttgaatataggtgaatgagtgtt-ggtgcagaaca 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| |||||||||||    
T  30433808 tcatcaatatgaagtgttggtgctacattaatttgaataatttacaaagagtgaaatggaaatttgaatattggtgaatgattgttgggtgcagaaca 30433711  T

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Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 30058194 - 30058119
Alignment:
Q  1 atatcagtatctaaacatcagacatgtcatcaatatgaagtgttggtgctacattaatttgaataatttacaaaga 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30058194 atatcagtatctaaacatcagacatgtcatcaatatgaagtgttggtgctacattaatttgaataatttacaaaga 30058119  T

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Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 30715613 - 30715687
Alignment:
Q  150 gagcattgacaacacaatatttgtaagacgttaactacatcaatgattgctagccacactttttaattacaaact 224  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30715613 gagcattgacgacgcaatatttgtaagacgttaactacatcaatgattgctagccacactttttaattacaaact 30715687  T

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Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 30747226 - 30747152
Alignment:
Q  150 gagcattgacaacacaatatttgtaagacgttaactacatcaatgattgctagccacactttttaattacaaact 224  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30747226 gagcattgacgacgcaatatttgtaagacgttaactacatcaatgattgctagccacactttttaattgcaaact 30747152  T

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Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 30057792 - 30057718
Alignment:
Q  150 gagcattgacaacacaatatttgtaagacgttaactacatcaatgattgctagccacactttttaattacaaact 224  Q
    |||||||||  || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30057792 gagcattgatgacgcaatatttgtaatacgttaactacatcaatgattgctagccacactttttaattacaaact 30057718  T

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Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 30679448 - 30679522
Alignment:
Q  150 gagcattgacaacacaatatttgtaagacgttaactacatcaatgattgctagccacactttttaattacaaact 224  Q
    |||||||||| || | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30679448 gagcattgacgacgctatttttgtaagacgttaactacatcaatgattgctagccacactttttaattacaaact 30679522  T

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Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 29870058 - 29869947
Alignment:
Q  14 aacatcagacatgtcatcaatatgaagtgttggtgctacattaa-tttgaataatttacaaagaatgaaatggaaatttgaatataggtgaatgagtgtt 112  Q
    ||||||| ||||||||||||| |||||| |||||||| |||||| ||||||| ||||| |||   |||||||||||||||||||| ||||||||| ||||    
T  29870058 aacatcatacatgtcatcaatctgaagttttggtgctgcattaagtttgaatgatttagaaaaggtgaaatggaaatttgaatattggtgaatgattgtt 29869959  T
Q  113 -ggtgcagaaca 123  Q
     |||||||||||    
T  29869958 gggtgcagaaca 29869947  T

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Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 30398374 - 30398304
Alignment:
Q  54 ttaatttgaataatttacaaagaatgaaatggaaatttgaatataggtgaatgagtgtt-ggtgcagaaca 123  Q
    ||||||||||| ||||||||| | |||||||||||||||||||| ||||||||| |||| |||||||||||    
T  30398374 ttaatttgaatgatttacaaaaagtgaaatggaaatttgaatattggtgaatgattgttgggtgcagaaca 30398304  T

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Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 29851302 - 29851239
Alignment:
Q  1 atatcagtatctaaacatcagacatgtcatcaatatgaagtgttggtgctacattaatttgaat 64  Q
    |||||||||||| ||||||| |||||||||||||||| |||| ||||||||  |||||||||||    
T  29851302 atatcagtatctgaacatcatacatgtcatcaatatgtagtgctggtgctatgttaatttgaat 29851239  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30747649 - 30747609
Alignment:
Q  1 atatcagtatctaaacatcagacatgtcatcaatatgaagt 41  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  30747649 atatcagtatctaaacatcagacatgtcatcaatgtgaagt 30747609  T

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Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 29869571 - 29869516
Alignment:
Q  150 gagcattgacaacacaatatttgtaagacgttaactacatcaatgattgctagcca 205  Q
    |||||||||  || |||| ||||||||||||||||||||| |||||||||||||||    
T  29869571 gagcattgatgacgcaatttttgtaagacgttaactacattaatgattgctagcca 29869516  T

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Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 30398411 - 30398377
Alignment:
Q  1 atatcagtatctaaacatcagacatgtcatcaata 35  Q
    |||||||||||||||||||||||||||||||||||    
T  30398411 atatcagtatctaaacatcagacatgtcatcaata 30398377  T

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Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 30244515 - 30244555
Alignment:
Q  1 atatcagtatctaaacatcagacatgtcatcaatatgaagt 41  Q
    ||||||||||||||||||||||||||||||| || ||||||    
T  30244515 atatcagtatctaaacatcagacatgtcatcgatgtgaagt 30244555  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 20298606 - 20298708
Alignment:
Q  12 taaacatcagacatgtcatcaatatgaagtgttggtgctacattaatttgaataatttacaaagaatgaaatggaaatttgaatataggtgaatgagtgt 111  Q
    |||||||||| ||||||||||||||||||| || ||||||| ||||||||||| ||||||||| | |||||||||| ||||||||| ||||||||| |||    
T  20298606 taaacatcaggcatgtcatcaatatgaagtattagtgctacgttaatttgaatgatttacaaaaagtgaaatggaattttgaatattggtgaatgattgt 20298705  T
Q  112 tgg 114  Q
    |||    
T  20298706 tgg 20298708  T

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