View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8364_high_26 (Length: 212)
Name: NF8364_high_26
Description: NF8364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8364_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 21645645 - 21645462
Alignment:
| Q |
18 |
aatccaaagaagaaatagtttgcatataggggtgcttgttatccagttctgacttgaagtcttgtaatagaggataagcaaataattggattttacaaga |
117 |
Q |
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| T |
21645645 |
aatccaaagaagaaatagtttgcatataggggtgcttgttatccagttctgacttgaagtcttgtaatagaggataagcaaataattggattttacaagc |
21645546 |
T |
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| Q |
118 |
aaacttgtttaccctacttgtagttgtattgtatcatatttatttcaaattttcaataatcccttcattggttccaacaccaaa |
201 |
Q |
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| T |
21645545 |
aaacttgtttaccctacttgtagttgtattgtatcatatttatttcaaattttcaataatcccttcattggttccaacaccaaa |
21645462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 21597771 - 21597593
Alignment:
| Q |
18 |
aatccaaagaagaaatagtttgcatataggggtgcttgttatccagttctgacttgaagtcttgtaatagaggataagcaaataattggattttacaaga |
117 |
Q |
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| T |
21597771 |
aatccaaagaagaaatagtttgcatatgggggtgcttgttatctagttctgacttgaagtcttgtaatagaggataatcaaataattggattttacaggc |
21597672 |
T |
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| Q |
118 |
aaacttgtttaccctacttgtagttgtattgtatcatatttatttcaaattttcaataatcccttcattggttccaacaccaaa |
201 |
Q |
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| T |
21597671 |
aaacttgtttaccatacttatag-----ttgtatcatatttatttcaaattttcaataatcccttcattggttccaacaccaaa |
21597593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 21623930 - 21623739
Alignment:
| Q |
18 |
aatccaaagaagaaatagtttgcatataggggtgcttgttatccagttctgactt-gaagtcttgtaatagaggataagcaaataattggattttacaag |
116 |
Q |
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| T |
21623930 |
aatccaaagaagaaataatttgcatatgggggtgcttgttatccagttctgactttgaagtcttgtaatagaggataatcaaataattggattttacggg |
21623831 |
T |
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| Q |
117 |
aaaacttgtttaccctacttgtagttgtat-------tgtatcatatttatttcaaattttcaataatcccttcattggttccaacaccaaa |
201 |
Q |
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| T |
21623830 |
caaacttgtttaccctacttgtagttgtattgtaatttgtatcatatttatttcaaattttcaataatcccttcattggttccaacaccaaa |
21623739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 22768020 - 22767962
Alignment:
| Q |
27 |
aagaaatagtttgcatataggggtgcttgttatccagttctgacttgaagtcttgtaat |
85 |
Q |
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| T |
22768020 |
aagaagtagtttgcatatagggatgcgtgttatccagttctgacttgacgtcttgtaat |
22767962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 22767852 - 22767792
Alignment:
| Q |
104 |
tggattttacaagaaaacttgtttaccctacttgtagttgta-ttgtatcatatttatttc |
163 |
Q |
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||||||||||| | ||| |||||||| || |||||||||||| |||||||||| ||||||| |
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| T |
22767852 |
tggattttacaggcaaaattgtttactctgcttgtagttgtatttgtatcatagttatttc |
22767792 |
T |
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