View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8364_low_1 (Length: 451)
Name: NF8364_low_1
Description: NF8364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8364_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 149 - 439
Target Start/End: Original strand, 52593472 - 52593762
Alignment:
| Q |
149 |
ccagagcaagcagaggtgcaatagagaattatgaatccagtttgaagaaggaaggagagacaaatggcaactccaacaacagagagtatatgtttttaat |
248 |
Q |
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| T |
52593472 |
ccagagcaagcagaggtgcaatagagaattatgaatccagtttgaagaaggaaggagagacaaatggcaactccaacaacagagagtatatgtttttaat |
52593571 |
T |
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| Q |
249 |
ttcaaacaaaaagaaagaccgaccaccttatcattggaagaacggtaccaaccaattaaataatattaactcctttacttgcttaacaccaactactact |
348 |
Q |
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| T |
52593572 |
ttcaaacaaaaagaaagaccgaccaccttatcattggaagaacggtaccaaccaattaaataatattaactcctttacttgcttaacaccaactactact |
52593671 |
T |
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| Q |
349 |
gctagttatttattggtaaaaaggaataaataattggtaaatttaagcgccaatcattattaagtttatcacgtgtgggaaagcgtgtgtg |
439 |
Q |
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| T |
52593672 |
gctagttatttattggtaaaaaggaataaataattggtaaatttaagcgccaatcattattaagtttatcacgtgtgggaaagcgtgtgtg |
52593762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 52593349 - 52593420
Alignment:
| Q |
19 |
ataatcatttcatgatcacagacttttttaaaaaggacaaaataaagagagacatactactgcctcatgatt |
90 |
Q |
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| T |
52593349 |
ataatcatttcatgatcacagacttttttaaaaaggacaaaataaagagagacatactactgcctcatgatt |
52593420 |
T |
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